Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01204 ATGGATCATGTGATTGGTGGGAAGTTTAAACTGGGAAGAAAAATTGGGAGTGGGTCTTTTGGGGAGCTCTACTTAGCTGTTAATATACAAACTGGAGAGGAAGTGGCTGTTAAGCTGGAACCCGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGAATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAACCGGAAGTTCACATTGAAGACTGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGTAAAGCAAATCAAGTATACGTCATTGACTATGGCCTTGGGAAAAAATATAGGGATCTTCAGACTCATAAGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCACCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTTATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCAACAAAAAACAAAAATATGATAAAATCAGTGAGACGAAGGTGTCAACTCCCATAGAGGTGCTCTGCAAATCATATCCCTCTGAGTTTGTGTCATATTTCCACTATTGCCGATCATTGAGGTTTGCAGACAAGCCAGATTATTCATATTTAAAGAGACTTTTTAGAGACCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTATGTTGAAGTATCCACAAGTTGGTGGCACCTCTAGAGGACGGCATGGCACTGGCAAGGCAGCTATGAATGCAGGTCCACCTGTACAAAAACAAGAAAAGATCTCAGTTGGGAAAGAGATTCGAGAGAAATTCTCTGGTGCTGTTGAAGCATTCTCCCGGAGGAACCACCACGGAAGTGCTAGTCCTCGTGTTGAACACACCAAGCATAGGAGTTTTGAGGATGTAGCAGTGCCCAAGGATTTGCACTATGCCCAGCACAATGCCACTAGATATGGCAGCAGTTCAAGAAGAGCCATGATCTCATCAAACAAGCAAATCTCCTCAGGTGACCATACTGGCAGGCTAACTTCAGGGGGCCATCCACATAGAATTCAACCTGGTTATGACACCAAACAAGCGACTTATGCACGCAATGGATCTATGAGAGGCAACCGTGATGATCCTCTCAGGAGCTTTGAGCTCCTCAATATCAGGAAGTAA 1353 0.4316 MDHVIGGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLGKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFADKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQVGGTSRGRHGTGKAAMNAGPPVQKQEKISVGKEIREKFSGAVEAFSRRNHHGSASPRVEHTKHRSFEDVAVPKDLHYAQHNATRYGSSSRRAMISSNKQISSGDHTGRLTSGGHPHRIQPGYDTKQATYARNGSMRGNRDDPLRSFELLNIRK* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01204 450 CDD STKc_CK1_delta_epsilon 8 282 - -
Rops6g01204 450 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01204 450 MobiDBLite consensus disorder prediction 434 450 - -
Rops6g01204 450 MobiDBLite consensus disorder prediction 396 450 - -
Rops6g01204 450 MobiDBLite consensus disorder prediction 302 324 - -
Rops6g01204 450 FunFam Putative Casein kinase I 1 85 - -
Rops6g01204 450 FunFam Casein kinase 1-like protein 1 330 - -
Rops6g01204 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops6g01204 450 PANTHER CASEIN KINASE-RELATED 9 362 - -
Rops6g01204 450 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01204 450 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Rops6g01204 450 MobiDBLite consensus disorder prediction 342 361 - -
Rops6g01204 450 Gene3D Transferase(Phosphotransferase) domain 1 1 349 - -
Rops6g01204 450 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops6g01204 450 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01204 Rops-Chr6 26880706 26889063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01204 2 213 Miscellaneous Gene Families AT1G29230 28.311 8.32e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Rops6g01204 Pkinase 3.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01204 K08960 - gmx:100789031 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03116 8 69066992 69074351 Rops6g01204 6 26880706 26889063 PCT