Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01198 ATGAAGTGCCTACGTTTAGGGGAGCCATTGGGAGGAGCAGATGAAGTGTTTCCTTCATCTGAATATCTTGTAACCAAGGAATTTTCAGCAAGTGAACATTCTTGCCTTGCTGGACAAGTTGATAAGAAGCCGGATACTGGCAATATAGAAGAAGCTGAATCATCTCTACGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGGGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCCTTACATGTATTTGAGGGAATAGATATAGGTGTCGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAACAGAGAACGCAGTAAGAAACATTCCCATAATCATGCTGAACCGCAAATGTCCATACATGCTGTTGGCTTACTGTTGGAAGCAGTCTTCCTAAAATCAAAATCTTTGCAGGTTCTTGAAAGATATAAAGAAGCTGCCCATGCTTGCAAAGTTATTCTGGACATAGTGGAGTCTTCATTGCCCGAAGGCTTGCCTGATAACTTTGGCACTGAATGTAAATTGCAGGCGACCCTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAGCTTGCTGATTGCCCACGTGAAGCTACTTTGTCTTACCGGCGAGCACTCCTTCATCATTGGAATCTTGATGTAGGGACTATAGCAAAGATTCAGAAAGAATTTGTTGTTTATCTTCTATATAGCGGAGGGGAAGCAACACCCCCTAGTCTCCGTTCCCAAATGGACGGCTCCTTTGTACCGAAAAACAACATAGAAGAGGCTATACTTCTTTTAATGGTTTTGCTAAGAAAAGTCTCTCTTAATAGAATTGAGTGGGATACTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTACTCCCTGGGACTATCCATCGAAAAGAAAGGTACCATGCTCTAGCTCTTTGTTATTGTGGAGCAGGTAAGGACTTAGTAGCACTGGATCTTCTAAAAAAATTGTTGAGTAGTGACCCAAAACATGTTCCAGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTCTAGTCTTGCAAAAGAAGGGGTAAGCTTTGCACAGAGAGTGCTCGATACCTTGGATGGCAGATGTAATCAGTTAGAAAATCTTGCCAATTTTTATCTTGGTGTTTCATTTTCAGCACACTCAAAATTGGCCATTTCTGATTCTGAGAGGTTAAAGAGACAATCTGAGGCACTTCATGCCCTGGAAACTGCTGGCAGGATGACCAGATTGAGAGACCCCCATGTACTATACCATCTCAGTTTAGAATATGCGGAACAAAGGAAGTTGGATGCTGCACTCCATTATGCAAAGTGGTTGCTAAAACTGGAAGGTGGTTCTAATGTTAAAGGGTGGTTATTGTTAGCCCGGATATTATCTGCTCAAAAACGGTTTTTGGATGCCGAATCTATGATCAATGCTGCTTTGGATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAGTGCCATTGAGACATATACTCAGCTTCTTGCTGTTCTTCAACTTCAGAGTAAAAGTTTTGGCTCTTGGAAGAAGCAATATAAGGACAATAGAGATCGTGCTAGGAGCTTAGAAGTGGAAATATGGCACGATCTTGCTTATGTGTACATCAGTCTTTCACAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCCAAGGCCATCAAACCATACTTTGCTTCTAGATGTCATGCACTAGGTACAATGTACGAAGCAAAAGGCCTTTACAAAGAGGCTCTAAAAGCTTTTCGTGATGCCTTAGGCATTGATCCTTGCCATGTCCTCAGCTTAATATCCACTGCAGTACTTCTTAGACGATTCAGTAATCACACAAGTGCTGCAGTCAGAAGCTTTCTAATGGATGCACTACGGCATGACAGATTGAATGCTTCTGCATGGTATAATCTTGGTCTTCTTCACAAGGTTGAAGGTACAATATCATCATACGTTGAAGCTACTGAATGTTTTCAGGCAGCACACTTTCTTGAAGAATCTGCACCTGTTGAACCTTTCAGATGA 2133 0.4173 MKCLRLGEPLGGADEVFPSSEYLVTKEFSASEHSCLAGQVDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRNRERSKKHSHNHAEPQMSIHAVGLLLEAVFLKSKSLQVLERYKEAAHACKVILDIVESSLPEGLPDNFGTECKLQATLSKAVELLPELWKLADCPREATLSYRRALLHHWNLDVGTIAKIQKEFVVYLLYSGGEATPPSLRSQMDGSFVPKNNIEEAILLLMVLLRKVSLNRIEWDTSILDHLSFALSVSGDLTALANQLEELLPGTIHRKERYHALALCYCGAGKDLVALDLLKKLLSSDPKHVPGLLMASKICCENSSLAKEGVSFAQRVLDTLDGRCNQLENLANFYLGVSFSAHSKLAISDSERLKRQSEALHALETAGRMTRLRDPHVLYHLSLEYAEQRKLDAALHYAKWLLKLEGGSNVKGWLLLARILSAQKRFLDAESMINAALDQTGKWDQGDLLRTKAKLQIAQGQLRSAIETYTQLLAVLQLQSKSFGSWKKQYKDNRDRARSLEVEIWHDLAYVYISLSQWHDAEVCLSKSKAIKPYFASRCHALGTMYEAKGLYKEALKAFRDALGIDPCHVLSLISTAVLLRRFSNHTSAAVRSFLMDALRHDRLNASAWYNLGLLHKVEGTISSYVEATECFQAAHFLEESAPVEPFR* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01198 710 Gene3D Tetratricopeptide repeat domain 131 539 IPR011990 GO:0005515
Rops6g01198 710 SUPERFAMILY TPR-like 510 698 IPR011990 GO:0005515
Rops6g01198 710 PANTHER PROTEIN NPG1 1 710 IPR043376 -
Rops6g01198 710 ProSiteProfiles TPR repeat profile. 598 631 IPR019734 GO:0005515
Rops6g01198 710 SUPERFAMILY TPR-like 318 537 IPR011990 GO:0005515
Rops6g01198 710 Pfam Tetratricopeptide repeat 445 501 - -
Rops6g01198 710 Gene3D Tetratricopeptide repeat domain 540 706 IPR011990 GO:0005515
Rops6g01198 710 SMART tpr_5 437 470 IPR019734 GO:0005515
Rops6g01198 710 SMART tpr_5 472 505 IPR019734 GO:0005515
Rops6g01198 710 SMART tpr_5 508 541 IPR019734 GO:0005515
Rops6g01198 710 SMART tpr_5 564 597 IPR019734 GO:0005515
Rops6g01198 710 SMART tpr_5 668 704 IPR019734 GO:0005515
Rops6g01198 710 SMART tpr_5 598 631 IPR019734 GO:0005515
Rops6g01198 710 Pfam Tetratricopeptide repeat 599 629 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01198 Rops-Chr6 26797634 26803830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01198 1 710 Calmodulin-binding Proteins AT4G28600 57.873 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01198 K21843 - gmx:100800762 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01198 6 26797634 26803830 Rops8g03123 8 69157730 69164820 PCT