Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01191 ATGGCACCCAATACAAGAGTGGTGGCGGCCTACCGTGCAATGGCAAATCTTGGAATTGCTGAATCGAAGGTGAAACCAGTATTAAAGAAGCTCCTGAAACTGTATGATAAAAATTGGGAACTTATTGAGGAAGAGAACTATAGAGCTCTAGCAGATGCTATATTTGAGGATGACGAACCTAAGGTGCCGGAAAAGAAAAGGAAAAGCAAGAAAGTTAATGAAGAAGAAGAGATAGACATAGAGGGTGAAGAAGCTCTGATGCATGTTGAATCAGCCCAACCTTTGAAAAGGTTGCGTTTAAGAGGTCAAGAGAGTCAGCCCTTGCATCCTCTGACCAACAATTCCCCTAGCTCAGCTGCGTCTCTATTAAAAAAGCCTAAATTAGAAGACACATTACCTGAGGACTGTCCTAGACAGCAGTCTCAAAACAAAGCTGTGTCACCTGAGGGCTGTTCTAGACAGCAGTCTCAAAACAAAGCCGTGTCATCTGATGGAAATGTAAGGATTGAAGGAAGCCCAGTTCCGTCACGAGATGGCATTGTTGACAAGGGAAAACGACCTGCATCACCCCAAGTTGCTTTTAGAGGAAGAAGACTTGTATCTGAAAGAGCATCCCCTTCAGTACCATCTAAAGAACCACCAGTTGAAGCAGGAAGGTTTCTGTTGCCAAACAACCAAATGCCTCATAGTCATGCATTGATCATACCCAAGGATGAACCTATTGATGAGTTGCCTGATTATGAGGTTCCCATTGCAGTGATTCCTCCTGATCCATCAAGTTTAAGGGACTCATCAATGAAGAATGGCGTAACTAAAAAGCAAAATGGCCATGTCACTGGGGCATCATCACAACGCAGAGATGAAGAAATTCTTCCTTCGTCAAATGATGAAGCAACTTCTAATATAGAGATAGCCTCGTCAACTCTTGGAGAAATAAAACTTTCTCTTAGCTGCAGCTCTGCTCGTTGGGGACCAGATATTCGTATGCCTAGTAGGGATCAACTTCTAGAATTGATGGAGGACAAGTGTCTGCGATCATATAAAATCACTGATCCAACATTTTCTGTCCAGAAACTGTTGAGAGATATATGTGACTGCATGTTGGAATTCAAAACTGATTCAAATGATGACCCCCAAGAAGGTTCTATGACCGGACCAAGTGTTGATGTATTGAAGGAATCAGAGGCACATGGCTCTCCAAGTGTCGAGGGAAATAAAAATTTGGACATGATTGCTCACTCGTCAAATGGATCAATCGATGTTAAGTCTTCTGCTGCCTTGGTTTCGCCCCGAAGTCCCCTTTCTCTAGCCCACCCGAGTGGTCTGGATGATGCCATGCTTGTTTCCAAGATGGACAAGACAAAGGATTTTTTGCAAAGTGATGTCAGAAAGGAGCTGGAGGATCCCATGTCTCCAAATTCACGTAGTTTGGTGGTTGTTCCACAGCATCAGCTTACAGTTGATGATATAAGGTCTTTTCATGATGTTAATGACCTTACAAAAGGAGAAGAAAATGTTCAAATTTCATGGGTGAATGAATCTACGAATGATTTCCTGCCATCTTTTAACTACATATCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAACATTTCTCTATCTCGTATTGGGGTGGAGGACTGTTGTTCGACCTGTATGGGCAATTGTGTCTTGTCTGCGCCCTGTGCTTGTGCAAATAAATCCGGGGGTGAGTTTGCATACACTGCTCAAGGCATACTGAAGGAAGAGTTTCTGGAAGAGTGCATTGCCATCAGTCGCAACCCTCAACAACATTACTTCTATTGCAAAGATTGCCCGCTTGAAAGATCTAAGAATGATGGTTGTTTAGAACCATGTAAAGGACACTTGAAAAGGAAGTTTATCAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGCAATCGTGTTACCCAGCGAGGAATAACTTGCAACTTGCAGGTATTTTTCACATCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTGGGAGAAGTTTTAACTGTTAAAGAGTTGCAGGAAAGGAACATGAAATACATGGAAAATGGGAAATATGCATACCCAGTAGTACTAGATGCAGATTGGGATTCAGGGTTTGTGAAGGATGAACAAGCTCTATGCTTGGATGCAGCAACCTTTGGCAACACTGCCAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCTGTTGAAGTTGAGGGCCCGGATCATTACTACTATCATTTTGCCTTTTTCACTTCCAGAAGCATAGCAGCACATGAAGAGCTTACTTGGGATTATGGCATTGACTTTCATGACCATGATCATCCTGTCAAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGATCAATTAGATCTGCGTCAATTGCGTGA 2472 0.4272 MAPNTRVVAAYRAMANLGIAESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEDDEPKVPEKKRKSKKVNEEEEIDIEGEEALMHVESAQPLKRLRLRGQESQPLHPLTNNSPSSAASLLKKPKLEDTLPEDCPRQQSQNKAVSPEGCSRQQSQNKAVSSDGNVRIEGSPVPSRDGIVDKGKRPASPQVAFRGRRLVSERASPSVPSKEPPVEAGRFLLPNNQMPHSHALIIPKDEPIDELPDYEVPIAVIPPDPSSLRDSSMKNGVTKKQNGHVTGASSQRRDEEILPSSNDEATSNIEIASSTLGEIKLSLSCSSARWGPDIRMPSRDQLLELMEDKCLRSYKITDPTFSVQKLLRDICDCMLEFKTDSNDDPQEGSMTGPSVDVLKESEAHGSPSVEGNKNLDMIAHSSNGSIDVKSSAALVSPRSPLSLAHPSGLDDAMLVSKMDKTKDFLQSDVRKELEDPMSPNSRSLVVVPQHQLTVDDIRSFHDVNDLTKGEENVQISWVNESTNDFLPSFNYISQNLVFQDAYVNISLSRIGVEDCCSTCMGNCVLSAPCACANKSGGEFAYTAQGILKEEFLEECIAISRNPQQHYFYCKDCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVTQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEVLTVKELQERNMKYMENGKYAYPVVLDADWDSGFVKDEQALCLDAATFGNTARFINHRCFDANLVEIPVEVEGPDHYYYHFAFFTSRSIAAHEELTWDYGIDFHDHDHPVKLFQCRCGSKFCRNMKRSNRSIRSASIA* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01191 823 SMART preset_2 496 636 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g01191 823 Pfam Ubiquitin-binding WIYLD domain 5 59 IPR018848 -
Rops6g01191 823 Gene3D - 1 59 IPR043017 -
Rops6g01191 823 MobiDBLite consensus disorder prediction 255 299 - -
Rops6g01191 823 MobiDBLite consensus disorder prediction 130 215 - -
Rops6g01191 823 Pfam Pre-SET motif 500 644 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g01191 823 MobiDBLite consensus disorder prediction 135 165 - -
Rops6g01191 823 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 822 IPR025776 -
Rops6g01191 823 SMART set_7 652 791 IPR001214 GO:0005515
Rops6g01191 823 ProSiteProfiles SET domain profile. 652 785 IPR001214 GO:0005515
Rops6g01191 823 CDD SET_SETDB-like 520 785 - -
Rops6g01191 823 MobiDBLite consensus disorder prediction 60 85 - -
Rops6g01191 823 SUPERFAMILY SET domain 490 793 IPR046341 -
Rops6g01191 823 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 818 - -
Rops6g01191 823 Pfam SET domain 664 785 IPR001214 GO:0005515
Rops6g01191 823 MobiDBLite consensus disorder prediction 60 76 - -
Rops6g01191 823 Gene3D SET domain 486 811 IPR046341 -
Rops6g01191 823 MobiDBLite consensus disorder prediction 261 281 - -
Rops6g01191 823 ProSiteProfiles Pre-SET domain profile. 548 649 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01191 Rops-Chr6 26716238 26723257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01191 628 810 C2H2 Transcription Factor Family AT2G23740 41.270 2.80e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g01191 Pre-SET 5.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01191 - - gmx:100787369 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01191 6 26716238 26723257 Rops6g01191 6 26716238 26723257 ECH
Rops8g04137 8 83389765 83395290 Rops6g01191 6 26716238 26723257 PCT
Rops6g01191 6 26716238 26723257 Rops8g03144 8 69325436 69333026 PCT