Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01185 ATGTCAACGGTCTCTAAAGATGACAACTTGGCCCTTTCTTCTGAGGATTCTTCATGCCCAGATGATTCTGAGCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCACCCTTCTCCCACTACTAAGTCCCATCACCACCATGCTTCTTATGCTAGAATATTCACCGCTAAGGATTTTCCTTCTTCAGCATCATCACCCTCCTCTTCTTCTTCTCCTTCCTCGTTGAGAAGGTCCAATGTTGCTGCTGGGACCAAAAGAGCCGCTGATTCTCTTGTTGCTAGTAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCCCTTCGAACATATAGAGTGAATAGCTTTAATAGCAATGCAAAATCAACTGAAGTATTCAACTCTATGGCTGAGAAGAGTAAGAGCAATAATACTGTGGTAAGGGAGAGTGCTGACAATGGCAATGTAAATAACGGCGTTAATATCAAAGAAAAAAGACACCTCAGGAGTTCCCCCTTCATCAAGGTAAATATGGATGGGATACCGATCGGAAGGAAGGTTGATTTGAGTGCCCATAGTTCCTATGAGACCTTGGCACAAACCCTGGAGGATATGTTTAATGAGTCGAGTACAACCATCACTTGCAAAGGATCAAATGGGGAGGATCATGGCATTATTATTGGAGGAGAAAGGCATTCAAAGTTGTTGGATGGATCTTCCAAGTTTGTGCTAACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGCTCAGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAAGAACAGCAGACAGAAAAGCAAGCCCATATAG 867 0.4394 MSTVSKDDNLALSSEDSSCPDDSELELGLGLSLSHPSPTTKSHHHHASYARIFTAKDFPSSASSPSSSSSPSSLRRSNVAAGTKRAADSLVASNRPSQVVGWPPLRTYRVNSFNSNAKSTEVFNSMAEKSKSNNTVVRESADNGNVNNGVNIKEKRHLRSSPFIKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESSTTITCKGSNGEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNSRQKSKPI* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01185 288 Gene3D - 156 278 - -
Rops6g01185 288 MobiDBLite consensus disorder prediction 1 47 - -
Rops6g01185 288 Pfam AUX/IAA family 55 275 IPR033389 -
Rops6g01185 288 MobiDBLite consensus disorder prediction 128 149 - -
Rops6g01185 288 SUPERFAMILY CAD & PB1 domains 158 264 - -
Rops6g01185 288 MobiDBLite consensus disorder prediction 1 18 - -
Rops6g01185 288 MobiDBLite consensus disorder prediction 60 92 - -
Rops6g01185 288 FunFam Auxin-responsive protein 156 276 - -
Rops6g01185 288 ProSiteProfiles PB1 domain profile. 161 268 IPR000270 GO:0005515
Rops6g01185 288 MobiDBLite consensus disorder prediction 60 79 - -
Rops6g01185 288 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 271 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01185 Rops-Chr6 26611708 26615202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01185 154 275 B3 DNA Binding Superfamily AT1G59750 33.607 6.31e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops6g01185 AUX_IAA 2.7e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01185 K14484 - gmx:100779400 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01185 6 26611708 26615202 Rops6g01185 6 26611708 26615202 ECH