Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01180 ATGGGGTTTGCACAATTTCTCGATAAAATCTCAGCTTCAACTTCTTCTTCCTCAGGATCGTCGAATATCCTTTTGAACACGATCCTAGGATTGCCTGTATTGGAACTTGTGGCTATATGCGTGAACCTGACTCTTGTTCTGTTGTTTCTCTTTGTTGTCTTGGTGAGAAAGATTCTTCTTGTGTACAAGGGTCGAATTGGGATTGGTAAGGACAGCACCAATGGCAATGCAAGTCCAATTTGTAGTGTTATTGAAGGAGAAACACGTGATGTTAGAATCGGTGCAGGGTTCAAGTTGTCAGTGTTGTCTTGTTTCTATGTTCTTTTTGTGCAAGTTTTGGTGTTGGGGTTTGATGGGGGTTCTTTGATTTGGGGTGAGGCTAATGGGAAGGCTTTGGACTGGTCTCTTCTTTCTGTGCCAGCTGCACAGGGTTTAGCTTGGTTTGTGTTGAGCTTCTCAGCTTTGTATTGCAAATTCAAGGAGTCTGAGAAGTTTCCATTTTTGTTGAGAGTTTGGTGGTTTTTGTCATTTATTATTTGCTTGTGTACTTTATATGTTGATGGGAGAGGATTTTGGGTGGAAGGTTCTAAGTACCTTTGTTCTCATACTCTTGCAAATTTTGCTGTCACCCCAGCTCTTGCCTTTTTGTGTGTAGTTGCAATTAGGGGAGTTACTGGTATACAAGTTTGTAGGAACTCTGATCTTCAAGAGCCATTACTCGTTGAGGAAGAACCGGGGTGTCTCAAGGTTACTCCTTATAGGGATGCTGGATTTTTTAGCTTGGCTACACTTTCTTGGCTGAGTTCACTTCTTTCCATTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTGTTGCACCAAGAGATAGAGCCAAGACCAGTTACAAGATTTTGAATTCTAACTGGGAGAGATTGAAGGCTGAAAATCCCTCTAAGAAGCCCTCATTAGCTTGGGCAATTCTCAAGTCATTTTGGAAAGAAGCAGCTCTGAATGCCATCTTTGCTGGTGTGAACACTTTGGTGTCATATGTAGGTCCATACATGATAAGTTACTTTGTTGATTACTTGAGTGGCAAAGAGACTTTCCCTCATGAGGGATATATCCTTGCTGGTATATTCTTTGTGGCAAAGCTTGTGGAGACCCTGACAACAAGGCAGTGGTATCTAGGAGTGGACATCATGGGTATGCATGTAAGGTCAGCTCTAACTGCAATGGTATATAGAAAGGGACTCAGACTCTCAAGCTTGGCAAAGCAAAGTCATACAAGCGGGGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCTTGGTACCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTGGCCCTTGTGATTTTGTATAAGAATGTTGGAATTGCTTTTGTGGCAACATTGATTGCTACCATCATTTCCATTGTTGTCACTGTTCCTGTGGCTAGGATACAAGAAAATTATCAAGACAGATTAATGACTGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGTTTGAGGAATATGAGGATCCTCAAGCTGCAAGCGTGGGAGGATAGATATCGAATTAAATTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTAAGGAAAGCACTTTATTCACAAGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCTGTCACTTTTGCTACTGCAATATTGTTGGGGGGTCAGCTGACTGCAGGTGGAGTTCTTTCTGCTCTTGCTACTTTCAGGATTCTCCAAGAACCTCTGAGAAATTTTCCTGACTTGGTATCAACCATGGCTCAGACAAAGGTTTCTCTTGATCGCATATCTGGTTTCCTGCAGGGTGAAGAATTGCAGGAAGATGCAACTATTGTCTTGCCACATGGCATTTCTAACATTGCCATAGAAATTAAGGATGGTGTCTTCTGCTGGGACCCTTCTTTGTCAAGGCCTACTCTGTCAGGAATACATATGAAAGTGGAAAGAGGGATGAGTGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAAAGTGTGTGGTTCTGCTGCGTATGTCTCCCAATCAGCATGGATACAGTCTGGAAATATAGAAGAAAATATCCTGTTTGGAAACCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCCTGTTCACTGAAAAAGGACCTAGAGCTTTTCTCACATGGAGACCAAACAATTATTGGTGACAGAGGTATAAACTTGAGTGGTGGCCAGAAGCAGCGGATCCAGCTTGCACGAGCACTCTACCAGGATGCTGATATTTATCTCCTTGATGATCCCTTCAGTGCACTTGATGCCCACACTGGATCAGAATTATTTAGAGAGTATGTATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATATTGGTTCTTAAAGAAGGCCACATCGTACAGGCAGGAATGTATGATGATCTTTTACAGGCAGGAACAGATTTTAGAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTACTCACTCCTCAGACGATTCAGATGAAAATGTGTCTCTGGATGCATCAGTTATGACCAGTAAACCATCCATTTCTTCTGCAAATGACATTGACAGTTTGGCAAAGGAAGTTCAAGAAGGATTATCAGATCAGAAAGCAATTAAGGAGAAGAAGAAAGCAAAACGCTCAAGAAAAAAACAGCTTGTTCAGGAAGAAGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCCTACATGGCTGCAGCATACAAAGGCTTATTGATTCCCCTCATAATCATCGCACAATCATTATTTCAGTTCCTGCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACAGAGGGAGACCAACCCAAAGTAACTCCCATGGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATGGTTCATATTTGTAAGGGCTGTTCTTGTGGCTACATTTGGTCTAGCAGCTGCACAGAAGCTATTTTTCAACATGCTTAGGAGTATTTTCCGTGCACCAATGTCTTTCTTTGACTCTACACCAGCCGGAAGGATCTTGAATCGCGTTTCAGTTGACCAAAGTGTTGTGGATCTTGACATTCCGTTTAGACTTGGAGGGTTTGCTTCATCAACAATACAACTTATTGGCATTGTTGGTGTAATGTCAGGAGTTACGTGGCAAGTTTTGCTCCTAGTAGTCCCAATGGCAGTTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATACAACTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATCAGAGGCTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCTCGACCATTCTTCTGCAGTCTTGCTGCTATTGAGTGGCTCTGCCTACGCATGGAATTACTTTCAACCTTTGTATTTTCTTTCTGTATGGTATTACTTGTGAGCTTTCCCCATGGAAGTATTGATCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGCCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATTTCTATTGAAAGGATTTATCAGTACAGCCAAATTCCTAGCGAAGCACCAGCAGTTATTGAAGATTCTTACCCTCCATCCTCGTGGCCTGAGAATGGGACAATCCAATTAATTGATCTCAAGGTCCGTTACAAGGAAAATCTTCCTTTGGTGCTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGAACTGGCAGTGGAAAATCTACTTTGATTCAAGCATTATTTCGATTGGTTGAACCGGCATCTGGGAGTATCCTTATAGACAACATCAATATTTCAGGGATTGGTCTTCATGACCTTCGAAGCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGACCCTCTTGAAGAGCATTCTGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTAGAGAGATCATCCGTGAGAAAGAGCAAAAGCTTGATACACCAGTACTAGAAAATGGAGATAATTGGAGTGTTGGACAGCGGCAACTTGTTGCTCTGGGCCGAGCTCTGCTTAAGCAGTCAAAGATACTTGTACTTGATGAAGCTACAGCATCTGTTGATACTGCTACTGATAATCTTATCCAGAAGATTATTCGAGAAGAGTTCAGAGACTGCACTGTTTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTGGTTCTGGTACTCAGTGATGGTCGAGTTGCAGAGTTTGACACTCCATCACGGCTATTAGAGGATAAGTCATCCATGTTTCTGAATGAAAGAGCTTTAGAACCTTCAGAGATAGTGGTGACACAAGACATCTCAAAAGTTGAAACAGTTATGATGATGCCTCAGTTGCTTGCGACTACTGCATTGGCACATGCAGAGACATGA 4674 0.4232 MGFAQFLDKISASTSSSSGSSNILLNTILGLPVLELVAICVNLTLVLLFLFVVLVRKILLVYKGRIGIGKDSTNGNASPICSVIEGETRDVRIGAGFKLSVLSCFYVLFVQVLVLGFDGGSLIWGEANGKALDWSLLSVPAAQGLAWFVLSFSALYCKFKESEKFPFLLRVWWFLSFIICLCTLYVDGRGFWVEGSKYLCSHTLANFAVTPALAFLCVVAIRGVTGIQVCRNSDLQEPLLVEEEPGCLKVTPYRDAGFFSLATLSWLSSLLSIGAKRPLELKDIPLVAPRDRAKTSYKILNSNWERLKAENPSKKPSLAWAILKSFWKEAALNAIFAGVNTLVSYVGPYMISYFVDYLSGKETFPHEGYILAGIFFVAKLVETLTTRQWYLGVDIMGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALVILYKNVGIAFVATLIATIISIVVTVPVARIQENYQDRLMTAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATAILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQGEELQEDATIVLPHGISNIAIEIKDGVFCWDPSLSRPTLSGIHMKVERGMSVAVCGMVGSGKSSFLSCILGEIPKLSGEVKVCGSAAYVSQSAWIQSGNIEENILFGNPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLTALADKTVIFVTHQVEFLPAADMILVLKEGHIVQAGMYDDLLQAGTDFRTLVSAHHEAIEAMDIPTHSSDDSDENVSLDASVMTSKPSISSANDIDSLAKEVQEGLSDQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQSLFQFLQIASNWWMAWANPQTEGDQPKVTPMVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFRAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASSTIQLIGIVGVMSGVTWQVLLLVVPMAVVCLWMQKYYMASSRELVRIVSIQKSPIIQLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFSFCMVLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAVIEDSYPPSSWPENGTIQLIDLKVRYKENLPLVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPASGSILIDNINISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLREIIREKEQKLDTPVLENGDNWSVGQRQLVALGRALLKQSKILVLDEATASVDTATDNLIQKIIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDKSSMFLNERALEPSEIVVTQDISKVETVMMMPQLLATTALAHAET* 1558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01180 1557 CDD ABCC_MRP_domain2 1286 1506 - -
Rops6g01180 1557 Pfam ABC transporter 1305 1453 IPR003439 GO:0005524
Rops6g01180 1557 Coils Coil 926 946 - -
Rops6g01180 1557 SUPERFAMILY ABC transporter transmembrane region 315 627 IPR036640 GO:0005524|GO:0016020
Rops6g01180 1557 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 253 1517 - -
Rops6g01180 1557 FunFam ABC transporter C family member 5 630 877 - -
Rops6g01180 1557 FunFam ABC transporter C family member 5 932 1269 - -
Rops6g01180 1557 CDD ABC_6TM_ABCC_D1 332 619 IPR044746 GO:0140359
Rops6g01180 1557 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1288 1522 IPR003439 GO:0005524
Rops6g01180 1557 CDD ABCC_MRP_domain1 645 844 - -
Rops6g01180 1557 Gene3D ABC transporter type 1, transmembrane domain 930 1269 IPR036640 GO:0005524|GO:0016020
Rops6g01180 1557 Gene3D ABC transporter type 1, transmembrane domain 301 623 IPR036640 GO:0005524|GO:0016020
Rops6g01180 1557 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 331 611 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g01180 1557 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 645 868 IPR003439 GO:0005524
Rops6g01180 1557 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 971 1241 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g01180 1557 SUPERFAMILY ABC transporter transmembrane region 968 1268 IPR036640 GO:0005524|GO:0016020
Rops6g01180 1557 Pfam ABC transporter transmembrane region 334 599 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g01180 1557 Pfam ABC transporter transmembrane region 972 1213 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g01180 1557 FunFam ABC transporter C family member 10 314 627 - -
Rops6g01180 1557 SMART AAA_5 1314 1499 IPR003593 GO:0016887
Rops6g01180 1557 SMART AAA_5 672 845 IPR003593 GO:0016887
Rops6g01180 1557 Gene3D - 1272 1523 IPR027417 -
Rops6g01180 1557 Gene3D - 624 888 IPR027417 -
Rops6g01180 1557 ProSitePatterns ABC transporters family signature. 770 784 IPR017871 GO:0005524|GO:0016887
Rops6g01180 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1280 1513 IPR027417 -
Rops6g01180 1557 CDD ABC_6TM_ABCC_D2 969 1263 IPR044726 GO:0140359
Rops6g01180 1557 FunFam ABC transporter C family member 3 1271 1521 - -
Rops6g01180 1557 Pfam ABC transporter 663 797 IPR003439 GO:0005524
Rops6g01180 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 867 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01180 Rops-Chr6 26572235 26580858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01180 645 861 Calmodulin-binding Proteins AT2G36910 31.356 4.42e-20 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01180 - - gmx:100781010 2655.17