Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01176 ATGGCTACACAAGGACAAGTCATTACCTGCAAAGCCGCGGTGGCATGGGAACCTAACAAGCCTTTAACCATCGAGGACGTTCAGGTGGCTCCACCACAGGCTGGGGAGGTTCGTGTCCAAATTCACTACACTGCTCTCTGTCACACCGATTCTTATACTTGGAGTGGCAAGGATCCAGAAGGTCTTTTCCCATGTATACTTGGTCATGAAGCTGCTGGGATTGTGGAAAGTGTTGGAGAAGGTGTTACTGATGTTCAGCCAGGAGATCATGTCATTCCTTGTTACCAAGCTGAATGTGGAGAGTGCAAGTTTTGCAAATCAGGCAAAACGAATCTTTGTGGCAAAGTTCGTGCTGCCACTGGAACTGGGGTCATGCTGAGTGATCGCAAGAGTCGTTTCTCTATTAATGGAAAACCTCTTTATCATTTTATGGGAACCTCCACATTCAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGACCCCAAAGCTCCTTTGGATAAAGTTTGCCTACTTGGATGTGGTGTTCCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAACCACGGTCAATTGTTGCTGTTTTTGGCCTTGGAACTGTGGGACTTGCTGTTGCAGAGGGTGCAAAAGCTGCTGGTGCATCACGGATTATTGGCATAGATGTTGATAGCAATAAGTTTGAAAGAGCAAAGAACTTTGGAGTAACCGAGTTTATTAATCCAAAAGAACACGAGAAACCAATTCAGCAGGTAATAGTTGATCTCACAGATGGTGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTGATGAGGGCTGCTTTGGAATGCTGCCATAAGGGATGGGGGATGTCAGTTATAGTAGGTGTTGCAGCATCAGGGCAAGAAATATCAACTCGACCTTTCCAATTGGTGACTGGGCGTGTGTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAAGTGCCTTGGCTTGTAGAAAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACTCACAGTTTGACTCTTGCTGAGATCAACAAGGCATTTGACTTCATGCATGAAGGAGGATGTCTCCGTTGTGTGCTTTCAATGCAAGTGTGA 1140 0.4526 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQIHYTALCHTDSYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGTGVMLSDRKSRFSINGKPLYHFMGTSTFSQYTVVHDVSVAKIDPKAPLDKVCLLGCGVPTGLGAVWNTAKVEPRSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDVDSNKFERAKNFGVTEFINPKEHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGMSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHSLTLAEINKAFDFMHEGGCLRCVLSMQV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01176 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Rops6g01176 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Rops6g01176 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Rops6g01176 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Rops6g01176 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Rops6g01176 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Rops6g01176 379 Pfam Zinc-binding dehydrogenase 206 328 IPR013149 -
Rops6g01176 379 Gene3D - 182 320 - -
Rops6g01176 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Rops6g01176 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Rops6g01176 379 Gene3D - 13 372 - -
Rops6g01176 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Rops6g01176 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01176 Rops-Chr6 26503869 26506805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01176 10 331 Monolignol Biosynthesis Gene Families AT1G72680 25.915 1.93e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01176 K00121 - gmx:100793008 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01176 6 26503869 26506805 Rops6g01176 6 26503869 26506805 ECH
Rops8g03167 8 69705496 69708854 Rops6g01176 6 26503869 26506805 PCT