Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01153 ATGAATCACTGTGTTCCAGATTTTGAAATTCAAATGGATGATGAAGAAGATTACCCATTACACTTCTCAAAGAAACCCTCCATGCAAAACGACGAGATCATGGAACTATTATGGCAAAACGGTCAGGTTGTGATGCAAAGCCAAAACCAAAGACCATTGAGAAAACTGCCACCGCCGATGAATAGCTCCGGCCACGGCGAGATTCCGGCGAGGGAGATTCGATCCTCCGGAGTGGAGAATTACGGTAACCAGCACCTGTTCATACAAGAAGATGAAATGGTTTCGTGGCTTCACGATTCAATTGATGAAGTTCCTCCATTCGATCATCACAATTTCTGCGCCGCCGACATCCTCTGCCAGCCGCCGGCGGTTAACGGCGGCCAGAATCACAATCGTGTCATGCAGGCTCCCTTCCGTGCGGCGGCGGCTCCTTGGCCTCCACTTCCGCCGGCGAAGAGGCCGGAGCAGGTGGCGAATAGGATTCAGAATTTCGCGCACTTCTCCAACCACAACAATGCGAGGCCGTGGTCGAGTTCGAAGGCCGCGGCCGGGCGGGAATCGACGGTGGTGGATTCTTGCGAAACGCCTATCGCTACGGCGACTGCTGCTTCGAGGCTCTCGGAGACGGTTAGGAGCTCGGCGGAAACCGGAGGCGGGAGTATGAACACCGCAGGAAAAGCGGCGACGTACGACATGACGGTGACGTCATCGCCTGGTGGTTCGAGCGGGAGTGATGAACCGGTTCAGAGGGAACCGGCGGTGGACCGGAAGAGGAAGGGACGTGAACCAGAGGAATCGGAGTTTCAGAGCGAGGATGTCGATTTTGAATCTCTGGAAGCAAAAAAACAAGTCCGTGGTTCTACATATACCAAGAGATCTCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATGCTAGATGAAGCAATCGAATACTTGAAGTCACTGCAGCTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCCGGAGTCCAGCAGTATATGCCGCCAATGGGAATGGGGATTGGAATGGGTATGGGCATGGAAATGGGAATGAACAGACCAGTAATACCATTTCCCAATATGTTAGCTAATTCGGCTTTGCCTGCAGCTGCTCATTTGGGACCAAGGTTCCCTATGCCTCCTTTCCACATGCCCCATGTTCCTGCACCTGATTCATCCAGAATGCAAGCAGCTAATCAGTCAGATAATATGCTTAACTCAGTTGGTACACTGGGTCCAGATCAATCACGGATCCCAAACTTCATTGATCCTTATCAGCAATACCTCGGTCCCCACCAGGTTCAGTTCCAATTAATGCAGGCAATGAACCAACCAAATGTCAGCAAGCCAAGTACCAGTAGGGATCAAGATAATCCAGAAAAGCATCATCAGTCAGAAGAAACATGA 1509 0.5056 MNHCVPDFEIQMDDEEDYPLHFSKKPSMQNDEIMELLWQNGQVVMQSQNQRPLRKLPPPMNSSGHGEIPAREIRSSGVENYGNQHLFIQEDEMVSWLHDSIDEVPPFDHHNFCAADILCQPPAVNGGQNHNRVMQAPFRAAAAPWPPLPPAKRPEQVANRIQNFAHFSNHNNARPWSSSKAAAGRESTVVDSCETPIATATAASRLSETVRSSAETGGGSMNTAGKAATYDMTVTSSPGGSSGSDEPVQREPAVDRKRKGREPEESEFQSEDVDFESLEAKKQVRGSTYTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGVQQYMPPMGMGIGMGMGMEMGMNRPVIPFPNMLANSALPAAAHLGPRFPMPPFHMPHVPAPDSSRMQAANQSDNMLNSVGTLGPDQSRIPNFIDPYQQYLGPHQVQFQLMQAMNQPNVSKPSTSRDQDNPEKHHQSEET* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01153 502 MobiDBLite consensus disorder prediction 488 502 - -
Rops6g01153 502 MobiDBLite consensus disorder prediction 474 502 - -
Rops6g01153 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Rops6g01153 502 Gene3D - 290 352 IPR036638 GO:0046983
Rops6g01153 502 MobiDBLite consensus disorder prediction 204 279 - -
Rops6g01153 502 MobiDBLite consensus disorder prediction 204 244 - -
Rops6g01153 502 FunFam Basic helix-loop-helix transcription factor 289 352 - -
Rops6g01153 502 CDD bHLH_AtPIF_like 294 357 IPR047265 -
Rops6g01153 502 SMART finulus 300 349 IPR011598 GO:0046983
Rops6g01153 502 PANTHER TRANSCRIPTION FACTOR PIF3 20 202 IPR044273 GO:0003700|GO:0006355
Rops6g01153 502 Pfam Helix-loop-helix DNA-binding domain 298 344 IPR011598 GO:0046983
Rops6g01153 502 MobiDBLite consensus disorder prediction 249 266 - -
Rops6g01153 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 372 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01153 Rops-Chr6 26234436 26240521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01153 1 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.632 1.37e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g01153 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01153 - - gmx:100788491 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01153 6 26234436 26240521 Rops6g01153 6 26234436 26240521 ECH
Rops8g03188 8 70015802 70022168 Rops6g01153 6 26234436 26240521 PCT