Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01139 ATGGCGGCATCACGGCGGCTCCGGGACCTGCAATCTCAACCGGGGAACAAGACCTGCGTGGATTGCTCTCAGAAGAATCCACAGTGGGCATCGGTATCCTACGGCATCTTCATGTGTCTAGAATGTTCCGGAAAGCACCGTGGCCTCGGCGTTCACATCTCCTTCGTCAGATCTGTCACCATGGATTCATGGTCCGAAATCCAGATCAAGAAAATGGAAGCTGGTGGCAACGATAATTTCAACGCTTTCCTTTCGCGTTATTCAATTCCCAAGGAAACCGACATCGTAACCAAATACAACACCAACGCCGCCGCCGTTTATCGTGATCGGATCCAGGCCATCGCGGAGGGCCGTCCATGGCGAGATCCGCCGGTGTTGAAGGAGAATCTCTCCGCCGCCGGCAAGGGGAAGCCGCCGATGGCTCAGAGTCGAAGGAATAATGATGGAGGTTGGGATGATTGGGATAATGATAGCGGTTTTGGGAATTCTGTTGATGTTAGGAGTAAATCGACTGGGGATTTCAGGAGCTTCAACGGTGGTGGTAGTGGTGGTGGTGCGCCGGCGAGGTCGAGGTCGACGGAGGATATGTATACGCGGTCGCAACTTGAGGCTTCGGCTGCGAATAAGGAGAGCTTCTTTGCAAAGAAGATTGCGGAGAATGATTCGCGACCTGATGGGGTTCCGCCATCGCAAGGTGGGAAGTACGTTGGGTTTGGATCGAGCCCTTCGCCTTCGCCTTCGCCTTCGCAGAGGAATAATCCTCAAAACGACTATTTATCTGTCGTTTCGCAGGGGTTTGGTAGATTGTCATTGGTGGCTCAATCTGCTGCTAATGTTGTTCAGGCAGGCACAAAAGAGTTCACTTCTAAGGTCAAGGATGGTGGTTATGATCAAAAAGTCAATGAAACTGTCACTGTTGTCACTCAAAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAAAGGGGTCATGGCTATGGCTTCACAGAAGGTTGAGGAGTACACCAGAGATAACCCAAATTGGAAGATTGATAGCTGGCAACAAAACGAGAACAACAGAAATGGTTACTATCAGGATTTCAATCAAGAGAACAAAGGCTGGAATTCTTCCACTGGAAGAGAACAATCTTCATCAGGGCAATTTAAAACTCATAGCTCGAGCTCTTGGGATGATTGGGACCACAAAGATAGTAGGAAGGAAGAATCAACTCCTCATCCATCTGGTGGGCAGTTTGGTAGCTCTTGGGATGATTGGGACAGCAAAGATTCTAGGAAGGAAGAACCAGCTAAAGGATCGGCTCCCCATAATAACAATGATGATTGGGCAGGCTGGGATAATGCCAAAGATGATGGATTTGATAATTTTTCTGATAATGCATCTAATAAGAAAGCTGTTGGTCATAATGGGAAATCAGATGCCACTTGGACCGGGGGAGGCTTTCTCTAA 1452 0.4862 MAASRRLRDLQSQPGNKTCVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDNFNAFLSRYSIPKETDIVTKYNTNAAAVYRDRIQAIAEGRPWRDPPVLKENLSAAGKGKPPMAQSRRNNDGGWDDWDNDSGFGNSVDVRSKSTGDFRSFNGGGSGGGAPARSRSTEDMYTRSQLEASAANKESFFAKKIAENDSRPDGVPPSQGGKYVGFGSSPSPSPSPSQRNNPQNDYLSVVSQGFGRLSLVAQSAANVVQAGTKEFTSKVKDGGYDQKVNETVTVVTQKTSEIGQRTWGIMKGVMAMASQKVEEYTRDNPNWKIDSWQQNENNRNGYYQDFNQENKGWNSSTGREQSSSGQFKTHSSSSWDDWDHKDSRKEESTPHPSGGQFGSSWDDWDSKDSRKEEPAKGSAPHNNNDDWAGWDNAKDDGFDNFSDNASNKKAVGHNGKSDATWTGGGFL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01139 483 MobiDBLite consensus disorder prediction 354 483 - -
Rops6g01139 483 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Rops6g01139 483 MobiDBLite consensus disorder prediction 119 205 - -
Rops6g01139 483 MobiDBLite consensus disorder prediction 419 435 - -
Rops6g01139 483 MobiDBLite consensus disorder prediction 236 256 - -
Rops6g01139 483 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Rops6g01139 483 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Rops6g01139 483 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Rops6g01139 483 MobiDBLite consensus disorder prediction 161 177 - -
Rops6g01139 483 MobiDBLite consensus disorder prediction 444 458 - -
Rops6g01139 483 MobiDBLite consensus disorder prediction 217 256 - -
Rops6g01139 483 MobiDBLite consensus disorder prediction 389 405 - -
Rops6g01139 483 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Rops6g01139 483 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Rops6g01139 483 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Rops6g01139 483 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
Rops6g01139 483 MobiDBLite consensus disorder prediction 354 388 - -
Rops6g01139 483 CDD ArfGap_ArfGap1 3 117 - -
Rops6g01139 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 405 IPR044519 GO:0005096|GO:0016192
Rops6g01139 483 SMART arf_gap_3 1 120 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01139 Rops-Chr6 26037340 26044404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01139 5 87 C2H2 Transcription Factor Family AT4G05330 48.810 1.67e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01139 K12492 - gmx:100806519 766.533