Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01133 ATGGGAGAAGAAGCGGTTTGCGTGCAAGCATTGGAAGATGGAAGGAAGGAAAACAATGAGGAAACAAGGACGGAATTGAAGCGTGATTTTCACCAATGCGTTGCTGATACTGAGCCTGAAATTTCTCCAAATAAGAAACAAGCAAAAGAAGTTTCCAACGATGAAGTGCGCTCTGAGGTTTCCAACCCCAACATTTCTGCAACAGAGCACGCGTTAACTTTTCAAGATATCAGTAGCCAACCAACTGAATTGGCGAATGTTAACCATGCAGAGTGTGGGGAACTAACTTCCACTTGTTTGGAGAATTCAAGTTCTGAGGAGACCTTGAGTGACGAAGCCGGTGTTCAGAATAATAATAACAACGATAATGATAACAACAAAAATAATAGTTCTCTGAATGATAAAGACACGAGTAGCACTGTGACGAAATCATGTGTTGTGTTGGAAATCCCCAAGCATGCTAGTTCATCTGGGATCAGAAAGATTACTTTTAAGTTTAGTAAAAAGAAGGAGGACTATGGTTATCAACCACCTGCTCCTATACACCGACCTGATGGAAATGGTTATGGCTTTCATGGGGATGATGAAGAATATTCGGCAAAGGATGATTTGTTAGAGAGCTCATGTGGAATGGGATATGTTCGTGATGGAGATATGGAGTTGTACACTCGCAATATGGAATTGAAAATGTCGAAGAAAGTAGTCCCCAATTGCTACCCCACAAATGTCAAAAAACTGTTATCAACTGGTATCCTTGACGGAGCGGTAGTGAAATATATTTACAACCCCGGAAAGGTTGAGCTCCCGGGGGTTATTGAGGGTGGCGGATATTTGTGTGGCTGTTCAGTGTGCAATTACTCCAGAGTGCTTAGCGCCTATGAGTTCGAGCAACATGCTGGTGCCAAGACTAGACATCCAAATAATCATATATTCCTTGAAAATGGAAGACCAATATATAGTATTATACAGGAAATAAAAACTGCCCCCCTCAGCATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAACGAGGTGTCCTTCCAGGTTTGGAAAGAGAGTCTTTTACAAAGCAACGGGAGGGTTCAGGCTTATAAAAATTGTAGCACCAAGTTTATTGGCATGCCTCATACAAACATCAGTTCCAGTCAATCTGTAGAAAATGCGAGCCACTTGTCGTCTTTGCATGTCCCAAGTCATTTTGAGCAGCAAATGTATGTGAATCAGACAACTGATGAGTGGAAACCTGTGGTGAAGAAGCCAAGCTCCTGCACTTCTAACACAGGTGTACTGCTGAAGAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAACGATTTGCACAGGTTACTTTTTATGCCTAATGGACTACCTGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGGTTGCTGTGACATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTATCGACACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTCTCTTTGGCGAGTGGTCAAAACATTACCACCGGAGATAGTGATGACATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGGTGCCCTAGGGCCTTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGATAGTAATTGGCATTGTCTAAATTGTAGAGATAATGCTGGTAATGGAAGAGAATCTTCTATTGCAAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACACCAGAATTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGATCGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCACGTTAGTTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGTGCAGACATTATACCATCATCCTTGTCCGAATTTATAATCAGGAAGCATGAGGAGAAGGGATTATGTACTTATGGAGGCATGAATGATGTTCGGTGGAGAATTTTAAGCGGAAAAAGTCGTTATCCAGAGCATTTACCATTACTTTCACGGGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATCGTTGCAACATCTGGTCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTCGGTGGGATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATATTGCTGAGCTTCCACTGGTAGCTACAAGCAGAGAACATCAAGGAAAAGGTTATTTTCAAGTGTTAATCTCTTGCATAGAGAGGTTGCTGTCTTCTCTGAATGTAGAAAAGCTGGTGCTTCCTGCAGCCGGGGATGCTGAGTCAATTTGGACTAAGAAATTAGGCTTCCGAAAGACGAGTGATGATCAGTTATCCAAATATCTTAGAGAGGTGCAGCTCACCCTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCTGGCGACAGAATGA 2667 0.4226 MGEEAVCVQALEDGRKENNEETRTELKRDFHQCVADTEPEISPNKKQAKEVSNDEVRSEVSNPNISATEHALTFQDISSQPTELANVNHAECGELTSTCLENSSSEETLSDEAGVQNNNNNDNDNNKNNSSLNDKDTSSTVTKSCVVLEIPKHASSSGIRKITFKFSKKKEDYGYQPPAPIHRPDGNGYGFHGDDEEYSAKDDLLESSCGMGYVRDGDMELYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELPGVIEGGGYLCGCSVCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEVSFQVWKESLLQSNGRVQAYKNCSTKFIGMPHTNISSSQSVENASHLSSLHVPSHFEQQMYVNQTTDEWKPVVKKPSSCTSNTGVLLKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLASGQNITTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGLQCVPDSNWHCLNCRDNAGNGRESSIARPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDDRTVIICDQCEKEYHVSCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADIIPSSLSEFIIRKHEEKGLCTYGGMNDVRWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVATSGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNIAELPLVATSREHQGKGYFQVLISCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKTSDDQLSKYLREVQLTLFNKTSMLEKTVQLATE* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01133 888 MobiDBLite consensus disorder prediction 37 63 - -
Rops6g01133 888 CDD NAT_SF 776 837 - -
Rops6g01133 888 ProSiteProfiles Zinc finger PHD-type profile. 614 675 IPR019787 -
Rops6g01133 888 SMART PHD_3 543 584 IPR001965 -
Rops6g01133 888 SMART PHD_3 616 673 IPR001965 -
Rops6g01133 888 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 772 858 IPR016181 -
Rops6g01133 888 CDD PHD1_AIRE 543 583 - -
Rops6g01133 888 ProSitePatterns Zinc finger PHD-type signature. 544 583 IPR019786 -
Rops6g01133 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 532 610 IPR013083 -
Rops6g01133 888 MobiDBLite consensus disorder prediction 99 138 - -
Rops6g01133 888 SUPERFAMILY FYVE/PHD zinc finger 539 587 IPR011011 -
Rops6g01133 888 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 725 875 IPR000182 GO:0016747
Rops6g01133 888 MobiDBLite consensus disorder prediction 42 56 - -
Rops6g01133 888 ProSitePatterns Zinc finger PHD-type signature. 617 672 IPR019786 -
Rops6g01133 888 Gene3D - 764 871 - -
Rops6g01133 888 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 531 609 - -
Rops6g01133 888 FunFam PHD zinc finger protein 615 675 - -
Rops6g01133 888 SUPERFAMILY FYVE/PHD zinc finger 614 670 IPR011011 -
Rops6g01133 888 ProSiteProfiles Zinc finger PHD-type profile. 541 586 IPR019787 -
Rops6g01133 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 675 IPR013083 -
Rops6g01133 888 PANTHER AUTOIMMUNE REGULATOR 13 882 - -
Rops6g01133 888 FunFam PHD zinc finger protein 764 871 - -
Rops6g01133 888 Pfam Tify domain binding domain 477 526 IPR032308 -
Rops6g01133 888 Pfam Tify domain binding domain 270 324 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01133 Rops-Chr6 25949760 25960531 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01133 1 888 PHD Transcription Factor Family AT3G53680 52.649 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01133 - - gmx:100808999 1576.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01133 6 25949760 25960531 Rops6g01133 6 25949760 25960531 ECH