Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01125 ATGTCTTTCCCCAATCAAGCATTTTGGACGGGAAAGAGTCCTGGGGATTTTAATGATGGTGACCTGACATGTGACAATTCTTCTAGAATTGAGTCCAAGCGCTCTCATCAGTGGTTCATTGATGGCCCTGAAGTGGATCTGTTTCCCAATAAGAAACAGACAGTAGAGACTCCAAACAATTTATCATCAGGAATGCTCAACTCCAATATTTCTTCATGGGGAAATTCCTCAAGTTTTCACTCTTTAACTGGTCATTTTACTGAACAGCTATTTGACCCAGATGCCACATCTATGAAATTTGAAGATGCAAACATTTGCCCTCTTAGCATAGATAATAAGTTGAGTGTGGAGAGAAAGGATAACATGGATCCTTTTGGGAGTGATTCCTCATTCGGTTTATCCATGTCAACTACATTAGAAGATCCTCACTTAGTTTTTAATCATGATGGAATCAGAAAAGTTAAAGTTAATGAGGTGAAGGAGTCTGAGAATGTCATGTCTGTTCGTACAAATAATCCTTACGATAGGGGAGTTAGCAACATTGTGTCAAATCCTCATGCATACAAGAGAGCCGATAATTCCATATCAATGAGTCTTCCCTACAACAAAGGGGATGCCAATGTAATATTGATGGATGATGCTTATGACAGGACAGATAACAATTTAATGTCAATGGGTCAATCTTATAACAAGGTAGATGGCAGCTTATCTATACATCCAACATACAAAGAGATTTGTGACACAGTATCAATGGATCAAGGATTCAGTAAGGTGGATAGTAATGTGATGTCTATTGCTCAAGCTTACAGCAAGGCCCATGACAATTCTATGTCAAGTAACCACTTATTCAATAAGGTTGGCAATGGCACCATATCAATGGGTCACACCTATGACCAGAGGGGAAATGACATGCCATTTGTTTCTCATTCTTATAATAAAGGAGAGAGCACTATCATATCCTTTGGTGGCTGTGATGATGATGATACAACTCCTTCCAGCTTATTTATTTCCAACTATGGAATGTTGATGGGTCAAGCACCGTCACATAAGTCAGAAGCTGTGAATGAGAAAGAGTTTGTCAGATCTAGCTCCAATTTACTTCCGAGTGCAGCTCAGACATCTACCCCTGAAACTGTAAATGTTCCCAAGACAAAAGACGATATAAAAATGTCTAAGAAAGCTACTTCAAACAACTTCCCTTCAAATGTCCGAAGTTTGTTATCCACTGGTATGCTGGATGGCGTCTCTGTGAAGTATAAGGCATGGTCACGGGAGAAGGAACTTCGAGGTGTTATAAAAGGTGCTGGTTATTTGTGCAGCTGTCAGTCATGTAATTTCTCTAAGGTTATCAATGCATATGAGTTGGAACGACATGCTGGTTGCAAGACAAAGCACCCGAATAATCATATTTACTTTGAGAATGGAAAAACTATATACGGGGTTGTACAAGAGCTCAGGAGCACTCCACAGAATATGTTATTTGAAGTTATTCAGACTATAACTGGTTCACCTATCAATCAGAAATCCTTCCGTATTTGGAAAGAATCCTTTTTGGCTGCAGCACGTGAACTCCATCGCATTTGTGGAAAGGATGAAGTAAAGCAATTGTTATAA 1614 0.3928 MSFPNQAFWTGKSPGDFNDGDLTCDNSSRIESKRSHQWFIDGPEVDLFPNKKQTVETPNNLSSGMLNSNISSWGNSSSFHSLTGHFTEQLFDPDATSMKFEDANICPLSIDNKLSVERKDNMDPFGSDSSFGLSMSTTLEDPHLVFNHDGIRKVKVNEVKESENVMSVRTNNPYDRGVSNIVSNPHAYKRADNSISMSLPYNKGDANVILMDDAYDRTDNNLMSMGQSYNKVDGSLSIHPTYKEICDTVSMDQGFSKVDSNVMSIAQAYSKAHDNSMSSNHLFNKVGNGTISMGHTYDQRGNDMPFVSHSYNKGESTIISFGGCDDDDTTPSSLFISNYGMLMGQAPSHKSEAVNEKEFVRSSSNLLPSAAQTSTPETVNVPKTKDDIKMSKKATSNNFPSNVRSLLSTGMLDGVSVKYKAWSREKELRGVIKGAGYLCSCQSCNFSKVINAYELERHAGCKTKHPNNHIYFENGKTIYGVVQELRSTPQNMLFEVIQTITGSPINQKSFRIWKESFLAAARELHRICGKDEVKQLL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01125 537 Pfam Tify domain binding domain 430 485 IPR032308 -
Rops6g01125 537 PANTHER AUTOIMMUNE REGULATOR 20 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01125 Rops-Chr6 25868234 25872446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01125 380 517 PHD Transcription Factor Family AT3G53680 55.072 6.59e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01125 - - mtr:25484103 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01125 6 25868234 25872446 Rops6g01125 6 25868234 25872446 ECH
Rops6g01125 6 25868234 25872446 Rops8g00241 8 4979516 4987839 ECH