Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01122 ATGAAGAGACAAAGAGATGAAGAAGCAGTAGAGAGCATTGATTTGGCAAATTGTCTAATGTTACTCTCTCATCCAAAAGAAAGTAAACCCCAGAAACGTTTTGGCCCTGTAGAATTTGAGTGCACAACTTGCAACCGCAAGTTCTCTTCATTTCAAGCCCTTGGTGGCCACAGGGCTAGTCACAAGAAGCCGAAACTAGAAGGGGAAGAACTCAAACCTGAGGCCAAAGCTTTGAACTTGGGGAGTAAACGCAAAACGCACGAGTGTTCCATTTGTGGTCAAGAATTCTCTTTGGGACAGGCACTTGGAGGACACATGAGAAGGCACAGAATTTCTGTCAATGAAGGGTTTTCTTCTATGAACCAGGTTGTTGTAAAAGTCCCAGTTCTGAAAAGGTCGAATAATACGAGGGTTATTATGTGCTTGGACTTGAACTTAACACCTTTGCAAAATGACTTGAAGTTGTTGTTCGGGAACAATGCACCAAAAGTTGATTCCTTCGTCTGA 507 0.428 MKRQRDEEAVESIDLANCLMLLSHPKESKPQKRFGPVEFECTTCNRKFSSFQALGGHRASHKKPKLEGEELKPEAKALNLGSKRKTHECSICGQEFSLGQALGGHMRRHRISVNEGFSSMNQVVVKVPVLKRSNNTRVIMCLDLNLTPLQNDLKLLFGNNAPKVDSFV* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01122 168 Pfam C2H2-type zinc finger 39 64 - -
Rops6g01122 168 Pfam C2H2-type zinc finger 87 111 - -
Rops6g01122 168 PANTHER ZINC FINGER PROTEIN ZAT5 3 152 - -
Rops6g01122 168 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Rops6g01122 168 SUPERFAMILY beta-beta-alpha zinc fingers 39 109 IPR036236 -
Rops6g01122 168 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Rops6g01122 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Rops6g01122 168 SMART c2h2final6 39 61 IPR013087 -
Rops6g01122 168 SMART c2h2final6 87 109 IPR013087 -
Rops6g01122 168 Gene3D Classic Zinc Finger 22 109 - -
Rops6g01122 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01122 Rops-Chr6 25828919 25829425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01122 1 165 C2H2 Transcription Factor Family AT2G37430 49.143 1.06e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g01122 zf-C2H2_6 8.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01122 - - aprc:113870747 249.595