Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01121 ATGGATTTAGCAAATAGTCTAATCCTGCTCTCTTCTGCCCAAGAAAGCAAACCCTCTGCTCCATTGGAGTTTGAGTGCAAGACTTGTAACCGCAAGTTCTCATCTTTTCAAGCTCTGGGTGGTCACAGGGCTAGCCACAAGAAGCCAAAACGTGATGGAGAAGAAGGGCTCAAACCAGCAGCTAAAAAAATGCATCAGTGTTCCATTTGTGGAATGGAATTCTCACTGGGTCAGGCACTTGGAGGACACATGAGAAAGCACAAGGGTGCCATCAATGAAGAAGGGTTTTCTTCCATAAACCAAGTTATTGCAAAAGCCCCAGTTCTGAAAAGATCAAATAGTAAGAGGATTATGTGCTTCGGATTGGACTTGAATTTGACACCCTTGGAAAATGACTTGAAGTTGTTGTTTGGAAACAAGGCACCTCAAGTAGATCTTTCTTTGTTCTGA 450 0.4311 MDLANSLILLSSAQESKPSAPLEFECKTCNRKFSSFQALGGHRASHKKPKRDGEEGLKPAAKKMHQCSICGMEFSLGQALGGHMRKHKGAINEEGFSSINQVIAKAPVLKRSNSKRIMCFGLDLNLTPLENDLKLLFGNKAPQVDLSLF* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01121 149 PANTHER ZINC FINGER PROTEIN ZAT5 17 132 - -
Rops6g01121 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Rops6g01121 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Rops6g01121 149 SUPERFAMILY beta-beta-alpha zinc fingers 24 87 IPR036236 -
Rops6g01121 149 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Rops6g01121 149 Pfam C2H2-type zinc finger 65 88 - -
Rops6g01121 149 Pfam C2H2-type zinc finger 24 49 - -
Rops6g01121 149 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Rops6g01121 149 SMART c2h2final6 24 46 IPR013087 -
Rops6g01121 149 SMART c2h2final6 65 87 IPR013087 -
Rops6g01121 149 Gene3D Classic Zinc Finger 22 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01121 Rops-Chr6 25805773 25806404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01121 1 146 C2H2 Transcription Factor Family AT3G53600 51.235 7.66e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g01121 zf-C2H2_6 1.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01121 - - aprc:113870747 227.254