Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01112 ATGTCCCGCCACTCTCCGCCGCCACCCTCGGTTTCAAGTTTAACCGCAACACCTCCGAGCATCAATGCATGCATCAAAGAAGCAGAAGCAGTGATACTAAAATGGAACCCGGAAACTTCCACATACGCCAAAGTTACCTCTCTCTTCTACGACAACAAAACAGAGGCAATGCACTTCATCCAGTGCGTTAACCAACTCCAAAAAGCCTTGCACTCGTCGCACTCACATAACCCATCCTCACAGGAACTCATTCACGCACAAAACCTAATGCAAATGGCAATGAAGAGACTCCAGAAAGAGTTCCACCAGATCTTATCAATGAACCGGGCCCATCTCGACCTCGAATCTGTCTCAACCTCAACTAGATCATCATTCTCTACATACGACGCCACACCGGAGGAAGATGTTTGCGCCGCAGGGGATTCAATCTCCGAAGTAGAACGTGTTTCTTCCGATGCCATGGAGGATCTGAGATCCATCGCTGATTGCATGATTTCCAACGGTTACACCAAAGAATGCCTGAGCGTTTACACCTCCATGAGAAAATCCATCGTCGACGAAGCAATTTATAGCCTTAACGTGGAGGAAAGAAGCTTCTCTAAGGTGAACAAGATGGACTGGGAAGTGCTCGAGTTGAAAATCAAGAGTTGGTTAGAGGCGGTTAAGATTTCTGTTAGGACACTCTTCGCCGGTGAGAGGATCCTCTGCGATCACGTCTTCGGTGCTTCACAATCCGTCCGAGAAGCTTGCTTCGCCCAGATTTCAAGAAATGGAGCCACTCTTCTGCTCCGATTCCCCGAACTCGTCGCCAAAACGAAGAAATCGCCACCGGAGAAGATTTTCCGCTTGCTTGATATGTACGCTGCAATCGCCGCGCTGCTGCCGGAGATTGAATCAATCTTCTCGTTTGGTTCAACCGACGCTGTTAAATCTCAAGCCTTTGATTCACTTCTCCGACTCACTGAGTCCGTACGAACGATTCTCTACGAATTCGAGTCCGCCCTCCAGAAAGACTCTTCCAAATCGCCGGCGAACTTCGGCGGTGTTCATTCCCTGACAACGCTAGTAATGAAGTTCCTCTCTGCTCTCGCAGATTACAGCAACGTGCTCGGTGAAATATTCTTGAACGTGCCTTCGCCGACCGAGTCACCGTTGCCGGAATCTTACTTATACAGTCCAGAATCCGACAATGCGACGGCGACGGCGTTTTCGGTGCTGGTAGAGTGGCTGATTCTGGTCCTTTTTCGCAAGATCGATGGCAAATCGAAACACTGCAAGGACGTTTCGTTGTCTTACGTGTTTCTCGCAAACAATCTCCGGCACGTGGTGGCCAAGGTTCGCACCTCGAACTTGCGTAACGTACTGGGCGATGATTGGGTGTTGAAGCACGAAGCAAAGATGAAACGGTTGATGGCGAAGTACGAGAGAGTAGTCTAG 1437 0.4955 MSRHSPPPPSVSSLTATPPSINACIKEAEAVILKWNPETSTYAKVTSLFYDNKTEAMHFIQCVNQLQKALHSSHSHNPSSQELIHAQNLMQMAMKRLQKEFHQILSMNRAHLDLESVSTSTRSSFSTYDATPEEDVCAAGDSISEVERVSSDAMEDLRSIADCMISNGYTKECLSVYTSMRKSIVDEAIYSLNVEERSFSKVNKMDWEVLELKIKSWLEAVKISVRTLFAGERILCDHVFGASQSVREACFAQISRNGATLLLRFPELVAKTKKSPPEKIFRLLDMYAAIAALLPEIESIFSFGSTDAVKSQAFDSLLRLTESVRTILYEFESALQKDSSKSPANFGGVHSLTTLVMKFLSALADYSNVLGEIFLNVPSPTESPLPESYLYSPESDNATATAFSVLVEWLILVLFRKIDGKSKHCKDVSLSYVFLANNLRHVVAKVRTSNLRNVLGDDWVLKHEAKMKRLMAKYERVV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01112 478 Gene3D Exocyst complex component Exo70 40 478 - -
Rops6g01112 478 PANTHER EXOCYST COMPLEX PROTEIN EXO70 21 477 IPR004140 GO:0000145|GO:0006887
Rops6g01112 478 SUPERFAMILY Cullin repeat-like 25 476 IPR016159 -
Rops6g01112 478 Pfam Exo70 exocyst complex subunit 215 476 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01112 Rops-Chr6 25679049 25680485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01112 20 477 EXO70 exocyst subunit family AT3G09520 55.365 2.43e-173 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01112 K07195 - gmx:100798477 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01112 6 25679049 25680485 Rops6g01112 6 25679049 25680485 ECH
Rops6g01112 6 25679049 25680485 Rops8g03232 8 70780588 70782510 PCT