Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01110 ATGGGTAACGCGCATGTTCATGGCCACCGCAAACACCGTAATCCCGTCCCTCACAACACGGTTCCTCCACCTTATAAATACGGTTCTAGTTCTCAAGCTCAGCCATCACCAAACGACGGCGTTTCCAATTCCAACAACATGCTCTCTTTGCCTTACACCCACGTCGACTCCAACCTCCGTTCCCTCGCCGGCCAAGCCGAGGGCTTCGGTCGCTTTGCAATCGGTGGACTCCACGGTCCCCTTCATCATGTCACTTCTCTTGCAGATGATGGACCTGGGTCACTACGTGAGGCATGTAGGAGAAAAGAACCTTTATGGATTGTTTTTGAGGTTTCGGGTACTATTCATCTTTCGTCATATTTGAGCGTGTCTTCATATAAGACAATTGATGGTAGGGGACAAAAGATTAAGCTCACTGGAAAAGGTTTGCGGCTGAAGGATTGTGAACATGTGATAATCTGCAATTTAGTGTTAGAAGGAGGAAGAGGGCCTGATGTTGATGGGATTCAGATCAAACCTAATTCGAAGCACATATGGATAGATCGTTGCAGTTTAAGTGATTTTGGTGATGGGTTGATAGATATCACTCGAGAAAGCACGGATATTACTATTTCAAGGTGTCACTTTTCTCAGCATGACAAAACAATTCTTATAGGGGCAGATCCCTCACATTTTGGTGATAGATGCATGAGGGTCACCATACACCACTGTTTTTTCAACGGGACTCGACAGAGGCATCCTCGTGTTAGATTTGCGAAAGTACATCTGTACAATAATTATACTAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGCCAGAAGAAGGTGGCATTTAAGTATCTTACTGAGAAGGTTTGTCCTGTTCTTATGTTTAGCGGCCAACTAAGCTCATCATGTTTCCAAATACCAACATCCATGGGCAGAGTTGAAAATTCAGATTCAGCTGAACAGGCAGCAGACAAGGAAGCAGGAGCAACTGGTCACATAAGGTCTGAAGGAGACTTGTTTTTAAATGGTGCTCAACCAGGGCTAATGACTGAGAATGTTGGGTGTAACATGTTTCACCCCAGTGAATACTATCCCACTTGGACAGTGCAACCTCCTACAGATGATCTAAAACAGATTCTTCATCTCTGCACTGGATGGCAATCAGTTGCAAGGCCAGCAGATCAAACAGTTTGA 1227 0.4466 MGNAHVHGHRKHRNPVPHNTVPPPYKYGSSSQAQPSPNDGVSNSNNMLSLPYTHVDSNLRSLAGQAEGFGRFAIGGLHGPLHHVTSLADDGPGSLREACRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQKIKLTGKGLRLKDCEHVIICNLVLEGGRGPDVDGIQIKPNSKHIWIDRCSLSDFGDGLIDITRESTDITISRCHFSQHDKTILIGADPSHFGDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKVCPVLMFSGQLSSSCFQIPTSMGRVENSDSAEQAADKEAGATGHIRSEGDLFLNGAQPGLMTENVGCNMFHPSEYYPTWTVQPPTDDLKQILHLCTGWQSVARPADQTV* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01110 408 Gene3D - 51 384 IPR012334 -
Rops6g01110 408 Pfam Pectate lyase 121 283 IPR002022 -
Rops6g01110 408 MobiDBLite consensus disorder prediction 1 49 - -
Rops6g01110 408 PANTHER PECTATE LYASE 18-RELATED 54 356 IPR045032 GO:0030570
Rops6g01110 408 SUPERFAMILY Pectin lyase-like 63 400 IPR011050 -
Rops6g01110 408 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Rops6g01110 408 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Rops6g01110 408 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Rops6g01110 408 MobiDBLite consensus disorder prediction 1 16 - -
Rops6g01110 408 MobiDBLite consensus disorder prediction 24 49 - -
Rops6g01110 408 SMART amb_all 92 290 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01110 Rops-Chr6 25663931 25666754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01110 87 408 Polysaccharide Lyase AT3G55140 68.634 1.78e-164 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01110 K01728 - gmx:100814368 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01110 6 25663931 25666754 Rops6g01110 6 25663931 25666754 ECH