Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01104 ATGGTGAAGGGATGTCAGAATGGCGAGGAGAACCGAGAAAAATCGAATTCAGAGCACGAAATCTTCAAGGCTTGGGCTAGCAGTGTTGTTGAATGCCAGGAGTACTTGAACGTGAGCGTGAAGACAGGGCTGACTCACCACGAGGTGGAGAAACGACGCCGTTCATATGGTTGGAATGAATTGGAGAAGCACGAGAAGCAATCCATTTGGAGCCTTATTCTCGATCAGTTCAACGACACTTTGGTTCGGATTCTCCTTATCGCTGCCATCGTTTCCTTCATCCTCGCCTTTCTTGACGGCGACGAAGGCGGCGGCGACACGGAGGTCACCGCCTTCGTGGAGCCACTCGTGATATTCCTCATACTCATCGTGAACGCCGTCGTTGGTGTTTGGCAGGAGAGCAATGCGGAGAAGGCACTCGAAGCGTTGAAGGAGATTCAATCGGAGCACGCCGTCGTAATTCGTGATGGAAAGTGGATTCCTTCCTTGCCGGCGAAGGAACTCGTCCCCGGCGATGTGGTGGAGCTTAAGGTCGGTGATAAGGTCCCTGCCGATATGCGTGTTGCCGAGTTAATTAGCTCAACGCTGCGTTTTGAACAGGGCTCGCTAACAGGGGAGAGTGAACCTGTGATTAAGACCAATAAAACTGTTCCAGAAGATTCTGATATTCAAGACAAGAAGTGCATGGTTTTTGCAGGAACCACAGTTGTTAACGGTCATTGCCTTTGTTTGGTTACACACACAGGTATGGAAACAGAGATCGGCAAAGTGCATAAGCAGATACACGTGGCAGCGTTGAGTGAGGAAGAGACACCACTGAAAAAGAAGCTGAACGAGTTTGGAGAATCCTTAACTCTGATAATTGGAGTGGTTTGCGCATTGGTGTGGCTAATCAATGTTAAGTATTTTCTCACTTGGGAATATATTGATGGGTGGCCGAGGAATTTTAAGTTTTCATTTGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCATTGGCCGTGGCTGCGATTCCTGAAGGTTTGCCTGCGGTAATTACGGCTTGTTTGGCTCTAGGGACTCGTAAGATGGCTCTGAAGAATGCCCTTGTTAGGAAGCTGACGAGTGTGGAAACTCTGGGTTGTACCACTGTGATTTGTTCTGATAAAACGGGTACCTTGACCACGAATCAGATGGCGGTGACGAAAATTGTGACTATTGGCTCTAACGCAGACACGCTAAGATATTTCAAGGTGGAAGGGACTACTTATAATCCATCTGATGGGAAAATAGAGGACTGGTCAACGGGTTCATTGGATGCTAATCTTGAGATGATAGCTAAAATATCTGCCGTTTGTAATGATGCTGGGATTGCAGAGTCAGAGCAAAAGTTTGTAGCCCATGGAATTCCTACTGAAGCAGCCTTAAAGGTTATGGTGGAAAAGATGGGCCTTCCCGAAGGATCCAAGGATGCGTTTTCAGCAAGTAGAAGTACCTTACTACGTTGTTGTGAATGGTGGAATGAACGTGACCGTCGGATTGCTACACTTGAGTTCGACCATAATAGGATGTCAATGGGTGTTATTGTGGACTCCAATCCAGGGAAAAGGTCACTGCTGGTAAAGGGTGCTGTAGAAAATGTGTTGAAACGAAGCTCTAAAATTCAGTTGTGTGACGGTTCTATTTTGAAACTGGACAATAATGGTAGGAACCTTGTATTGCAAGCTCTTCATGAAATGTCAACTGGTGCATTACGCTGTTTGGGATTTGCATACAAGGATGAGCTCCCAATGTTTGAAAGCTACAGCGGTAATGATGATCATCCAGCCCACCGGCTTTTGCTTAATCCTGCCAACTATTCATCAATTGAAAGTGAACTTGTTTTTGTTGGCTTTGTTGGGTTAAGGGATCCTCCTAGGGAGGAGGTATACCAAGCAATTCAGGACTGCAAAGCAGCTGGAATTCGTGTTTTGGTGATTACTGGAGACAACAAGGACACAGCAGAAGCTATATGCCGTGAAATAGGTGTATTTGGACACAAAGAAGGCATTAGTTCGAGAAGCATAACGGGAAAACAATTTATGGACCTGCGTGATAAAAAAGCCCATCTGACTCAGAGTGGTGGGCTTTTGTTTTCGAGGGCTGAGCCTAGGCACAAGCAAGAAATTGTTAGGCTGCTCAAAGAGGACGGGGACGTGGTGGCCATGACTGGAGATGGTGTTAATGACGCACCTGCCTTGAAGCTTGCTGATATTGGCATTGCAATGGGCATTACAGGGACTGAGGTGGCAAAGGAAGCTTCGGATATGGTATTGGCTGATGATAATTTTAGTACAATTGTTGCTGCTGTCGGTGAAGGTAGATCTATCTACAATAACATGAAGGCTTTTATCAGGTATATGATCTCTTCCAATATTGGCGAGGTTGCTTCTATATTTCTAACGGCTGCCCTAGGTATTCCTGAAGGTTTGCTACCTGTTCAGCTTCTGTGGGTCAATCTTGTCACAGATGGACCACCCGCAACAGCTCTGGGATTTAACCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCACAGTGACGACTCACTAATTAACGCGTGGATTTTATTCCGTTATCTGGTTGTTGGGATGTATGTTGGATTAGCTACAGTTGGTGTCTTCATTATATGGTATACCCATGATTCCTTCTTGGGTATTAACCTTAGCGGGGATGGCCACTCTCTTGTCACGTACTCTCAACTTGCCAACTGGGGTCAGTGCTCTACATGGAACAATTTCACTGCTTCTCCCTTCACCGCTGGTGCTAGAGTTTTCTCTTTTGATAATGACCCTTGTGAATATTTCGGAGCTGGAAAAGTGAAAGCTATGACTCTCTCACTCTCTGTGTTGGTAGCCATTGAAATGTTCAATTCCCTCAATGCCCTTTCTGAGGATGGAAGCCTTTTGACAATGCCTCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCTGTGTCATTTGGTCTTCACTTTTTGATCTTGTATGTGCCATTCTTAGCCCAAGTGTTTGGCATCGTGCCCCTGAGCTTCAATGAATGGCTTTTGGTTTTGGTTGTTGCATTCCCTGTTGTTATAATTGACGAGATTCTGAAATTTGTGGGGAGATGTACAAGCAGGTTTCAAACATCTCCAGCTAGAAGATCAAAGCAAAAATCAGAGTAG 3186 0.4564 MVKGCQNGEENREKSNSEHEIFKAWASSVVECQEYLNVSVKTGLTHHEVEKRRRSYGWNELEKHEKQSIWSLILDQFNDTLVRILLIAAIVSFILAFLDGDEGGGDTEVTAFVEPLVIFLILIVNAVVGVWQESNAEKALEALKEIQSEHAVVIRDGKWIPSLPAKELVPGDVVELKVGDKVPADMRVAELISSTLRFEQGSLTGESEPVIKTNKTVPEDSDIQDKKCMVFAGTTVVNGHCLCLVTHTGMETEIGKVHKQIHVAALSEEETPLKKKLNEFGESLTLIIGVVCALVWLINVKYFLTWEYIDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITACLALGTRKMALKNALVRKLTSVETLGCTTVICSDKTGTLTTNQMAVTKIVTIGSNADTLRYFKVEGTTYNPSDGKIEDWSTGSLDANLEMIAKISAVCNDAGIAESEQKFVAHGIPTEAALKVMVEKMGLPEGSKDAFSASRSTLLRCCEWWNERDRRIATLEFDHNRMSMGVIVDSNPGKRSLLVKGAVENVLKRSSKIQLCDGSILKLDNNGRNLVLQALHEMSTGALRCLGFAYKDELPMFESYSGNDDHPAHRLLLNPANYSSIESELVFVGFVGLRDPPREEVYQAIQDCKAAGIRVLVITGDNKDTAEAICREIGVFGHKEGISSRSITGKQFMDLRDKKAHLTQSGGLLFSRAEPRHKQEIVRLLKEDGDVVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLLPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRHSDDSLINAWILFRYLVVGMYVGLATVGVFIIWYTHDSFLGINLSGDGHSLVTYSQLANWGQCSTWNNFTASPFTAGARVFSFDNDPCEYFGAGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLVVAFPVVIIDEILKFVGRCTSRFQTSPARRSKQKSE* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01104 1061 SUPERFAMILY Calcium ATPase, transduction domain A 148 260 IPR008250 -
Rops6g01104 1061 Pfam Cation transporter/ATPase, N-terminus 25 92 IPR004014 -
Rops6g01104 1061 Pfam E1-E2 ATPase 146 358 - -
Rops6g01104 1061 PRINTS P-type cation-transporting ATPase superfamily signature 646 656 - -
Rops6g01104 1061 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Rops6g01104 1061 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Rops6g01104 1061 PRINTS P-type cation-transporting ATPase superfamily signature 754 766 - -
Rops6g01104 1061 PRINTS P-type cation-transporting ATPase superfamily signature 624 635 - -
Rops6g01104 1061 PRINTS P-type cation-transporting ATPase superfamily signature 730 749 - -
Rops6g01104 1061 Pfam Cation transporting ATPase, C-terminus 815 1041 IPR006068 -
Rops6g01104 1061 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 794 1048 - -
Rops6g01104 1061 FunFam Calcium-transporting P-type ATPase, putative 626 775 - -
Rops6g01104 1061 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 390 631 - -
Rops6g01104 1061 Pfam haloacid dehalogenase-like hydrolase 377 744 - -
Rops6g01104 1061 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 628 IPR023299 GO:0000166
Rops6g01104 1061 Gene3D - 75 1043 - -
Rops6g01104 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 24 1044 IPR023298 -
Rops6g01104 1061 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 248 407 - -
Rops6g01104 1061 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1046 - -
Rops6g01104 1061 Gene3D - 377 775 IPR023214 -
Rops6g01104 1061 NCBIfam HAD-IC family P-type ATPase 704 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g01104 1061 NCBIfam HAD-IC family P-type ATPase 319 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g01104 1061 NCBIfam HAD-IC family P-type ATPase 117 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g01104 1061 SMART Cation_ATPase_N_a_2 23 97 IPR004014 -
Rops6g01104 1061 SUPERFAMILY HAD-like 378 834 IPR036412 -
Rops6g01104 1061 SFLD Haloacid Dehalogenase 361 782 - -
Rops6g01104 1061 SFLD p-type atpase 361 782 IPR044492 -
Rops6g01104 1061 Gene3D - 390 631 IPR023299 GO:0000166
Rops6g01104 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Rops6g01104 1061 Coils Coil 1056 1061 - -
Rops6g01104 1061 FunFam Calcium-transporting ATPase, putative 125 262 - -
Rops6g01104 1061 Gene3D - 42 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01104 Rops-Chr6 25537221 25543368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01104 6 1061 Primary Pumps ATPases(2) AT1G07670 76.271 0.0 1660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01104 K01537 - gmx:100788807 1770.36