Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01097 ATGGAAGAAACAACAGCAACCATCATGGCTTCACTCTCCTCTACCCTTACTCCTTCCCAGTTCTCAGATCTCACACACTCCATTCTCTCCACCACTCGCCGCCATCACCACCGCCTCTCCTTCCTCCTCTCTTCCCCATCTCTCTTCTCTTTAACCCTTCACCACCTCCACTCTCTCTCTCTTCCCCAGAAGAGCCTCCTCATTGCCCGCCACCTCCTCTCTTCTCTCCACCTCATCACCAGCCACGTCATACCCATGTCAGCACCACCCTTGTCCACCGCCATCAGACAACGTGAACTCGACGCTGTGTTGTTGCTTCTTTTGTTATGTGAGACCCATAACCACAACCCAGAAGCCCTTGAAGCACCCTTTTCAGATTGGAGGGTGAACTTGAACACCCTCTTCTTGGAAACTTTGTTAACGCTTTCTTGTTCTTCTGCACCACCCCTTGGTGCATTTGAAGGGATAATCTTGATTCCGTTCATTGAGACTGTGAGTCGGTGCTGGAGACTCGTCAGTGCTATGGGTTGTGGCGAGAAGGAGGTGGGGGAGGTGGCGGCGTCGGCGGCGACGGTGGTGGCTCTGCCTTCGGTGGAGGTGAAGGTAGTTGGCAAAGAGTGTGTGATATGCAAAGAGGAGATGCGGTTAGGGAGGGACGTGTGTGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGCATTTTGCCGTGGCTTGGGAAGAGGAACACGTGTCCTTGTTGCAGGTTCAGGTTACCGTCCGATGATGTCTTCGGAGAGATCCAACGGTTGTGGGAAGTCTTGGTTAAAATGGGTGCAAAAGAATAG 825 0.5236 MEETTATIMASLSSTLTPSQFSDLTHSILSTTRRHHHRLSFLLSSPSLFSLTLHHLHSLSLPQKSLLIARHLLSSLHLITSHVIPMSAPPLSTAIRQRELDAVLLLLLLCETHNHNPEALEAPFSDWRVNLNTLFLETLLTLSCSSAPPLGAFEGIILIPFIETVSRCWRLVSAMGCGEKEVGEVAASAATVVALPSVEVKVVGKECVICKEEMRLGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKMGAKE* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01097 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 259 IPR013083 -
Rops6g01097 274 CDD RING-H2_PA-TM-RING 206 248 - -
Rops6g01097 274 SMART ring_2 207 247 IPR001841 -
Rops6g01097 274 Pfam Ring finger domain 205 248 IPR001841 -
Rops6g01097 274 SUPERFAMILY RING/U-box 202 253 - -
Rops6g01097 274 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Rops6g01097 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01097 Rops-Chr6 25496896 25498034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01097 2 269 C3H Transcription Factor Family AT5G02750 52.669 2.34e-76 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01097 - - cam:101509295 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01097 6 25496896 25498034 Rops6g01097 6 25496896 25498034 ECH