Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01087 ATGGGTTGGATTCCCTGTTCTGGAAGCTCAAACACTAAGAAGAAGATAAAGAAGAAGTTGGAAGTGCAAGACAGCTTGGTTGATCCGATCAAAGCCACCCCAGGGAAATTGAAGAGGAATTCATCCATGAATTCCAAAGATTCCTCTAGAAATGGAAACCCTGATCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCATCTGCCGCTAGAAATTTTAGAGCAGAGTGTCTTTTGGGTGAGGGAGGCTTTGGCAGAGTATACAAAGGGCGTTTGGAAAACATTAATCAGATTGTTGCAATTAAGCAACTTGACCGGAATGGGCTGCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTACATGATCTTTCTCCTGGCAAGAAACAACTTGACTGGAACACAAGAATGAAAATAGCTGCTGGGGCAGCAAGGGGATTGGAATATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATTTGAAGTGCTCCAACATTTTGCTTGGTGAAGGTTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAAGTTGGTCCAGTGGGTGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAGTTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATCACTGGAAGGAAAGCGATCGACAATTCAAAATCTGCAGGAGAGCCGAATCTTGTTGCATGGGCTAAACCCTTGTTTAAAGATCGAAGCAAATTTTCACAGATGGCTGATCCAATGCTTCAAGGTCAATATCCTCCAAGAGGGCTATACCAGGCTCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTAGTCACAGCTTTGAGTTACCTTGCTTCACAAAACTATGACCCCAATACGCAGACATTACAAAGCTCTCGCCTTGCTCCTGGCACTCCGCCTAGAACCAAGAGGGGACAGTGA 1143 0.4357 MGWIPCSGSSNTKKKIKKKLEVQDSLVDPIKATPGKLKRNSSMNSKDSSRNGNPDHIAAQTFSFRELASAARNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLSPGKKQLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEPNLVAWAKPLFKDRSKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQNYDPNTQTLQSSRLAPGTPPRTKRGQ* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01087 380 PANTHER OS07G0668900 PROTEIN 21 360 - -
Rops6g01087 380 Pfam Protein tyrosine and serine/threonine kinase 78 347 IPR001245 GO:0004672|GO:0006468
Rops6g01087 380 MobiDBLite consensus disorder prediction 31 55 - -
Rops6g01087 380 FunFam Serine/threonine-protein kinase PBS1 46 150 - -
Rops6g01087 380 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01087 380 MobiDBLite consensus disorder prediction 359 380 - -
Rops6g01087 380 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Rops6g01087 380 SUPERFAMILY Protein kinase-like (PK-like) 54 348 IPR011009 -
Rops6g01087 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Rops6g01087 380 FunFam Serine/threonine-protein kinase PBS1 151 366 - -
Rops6g01087 380 CDD STKc_IRAK 80 348 - -
Rops6g01087 380 MobiDBLite consensus disorder prediction 37 55 - -
Rops6g01087 380 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Rops6g01087 380 Gene3D Transferase(Phosphotransferase) domain 1 151 368 - -
Rops6g01087 380 SMART serkin_6 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01087 Rops-Chr6 25411906 25415616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01087 34 353 Glycoside Hydrolase AT3G07070 68.125 1.13e-163 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Rops6g01087 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01087 - - gmx:100776041 718.383