Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01083 ATGCCGCCTAAGCAGAAATCAAAAGCTGATGTAGCAAAGAAGCAGAAGGTTGTAGAAGACAAAACCTTCGGTCTCAAGAACAAAAACAAAAGCAAACAGGTCCAGAAATATGTCCAAAACCTCCAACAATCCGTGCAACCCAGACCCGATGCTTCCAAAGTCGATGCCAAGAAAAGGAAGGAGGAGGAGAAGGCCAAGGACAAGGAGCTAAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCCATATTATGTGAGTTTTTTAAAGTGGGGCAGTGTGCCAAGGGCTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAGAAGATTGATATATACAGTGATAAGCGTGACCAGGAAACAATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAACTGAGTATAATCAAAACAAACCAACTGACATAGTCTGTAAACACTTTTTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGCCTGCCCCAATGGTGGTAAGAATTGCCACTACAGACATGCACTTCCCCCTGGATATGTTTTAAAATCTCAAATGAAGGCTTTGTTAGAGGAAGAAACTGAAAAAATGTCAATTGAAGAGGAGATTGAAAATCAGCGTTCCAAAGTGACGACTACAACTCCTATGACTCCTGAGTTATTTCTTCAATGGAAGAAGAAGAAGATAGAAGAGAGAGATGCCAATTTGGCTCTACAACAGGCAGAGAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGCTATTTTTGTCAGATGCTAGTTTGTTTGTGGATGATGCTGAGGCATATGACAAGTACCAAAGAGAACCAGAATCTGATGAAACTGAACAGAATGTGAATGGGAATGCTGCTGAAGATGGTCCTGGCACCTCAACAACAGCTAGTGCTGATGCTGAAGTTCCTGATGACATTGACGACGATGACGACGATGAATTGGACTTGGATGAGTTGAATGAACTGGAAGCAAGCTTATCCAAGACATCAATCCAAATGAAGGAAACAGGAGCTGAAGCTTGA 1092 0.4267 MPPKQKSKADVAKKQKVVEDKTFGLKNKNKSKQVQKYVQNLQQSVQPRPDASKVDAKKRKEEEKAKDKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKHFLEAVEKKQYGWFWACPNGGKNCHYRHALPPGYVLKSQMKALLEEETEKMSIEEEIENQRSKVTTTTPMTPELFLQWKKKKIEERDANLALQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPESDETEQNVNGNAAEDGPGTSTTASADAEVPDDIDDDDDDELDLDELNELEASLSKTSIQMKETGAEA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01083 363 Coils Coil 201 228 - -
Rops6g01083 363 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Rops6g01083 363 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Rops6g01083 363 Coils Coil 246 266 - -
Rops6g01083 363 Pfam DRG Family Regulatory Proteins, Tma46 215 300 IPR032378 -
Rops6g01083 363 MobiDBLite consensus disorder prediction 292 337 - -
Rops6g01083 363 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Rops6g01083 363 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Rops6g01083 363 Gene3D - 204 279 - -
Rops6g01083 363 Coils Coil 342 362 - -
Rops6g01083 363 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 360 - -
Rops6g01083 363 MobiDBLite consensus disorder prediction 40 65 - -
Rops6g01083 363 MobiDBLite consensus disorder prediction 51 65 - -
Rops6g01083 363 MobiDBLite consensus disorder prediction 301 322 - -
Rops6g01083 363 Gene3D - 87 203 - -
Rops6g01083 363 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01083 Rops-Chr6 25327883 25331947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops6g01083 DFRP_C 9.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01083 - - gmx:100806617 600.127