Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01082 ATGAACTCCAACAACACTTCGAATTCTCAGTCAATGCCAATGGCAACTACACCAGCACCCGCTGATGGGTCTGGCAAGAAGGTTAGAAAGCCTTACACCATTACCAAGTCAAGAGAGAGTTGGACTGAGGAAGAACATGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTGATTCAGATTCGAAGCCATGCTCAAAAATACTTCTTGAAGGTTCAAAAAAATGGGACAGTAGCACATGTGCCTCCTCCTCGTCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCATTTGCTTATGCTTCTTCGACAAATACCCTTGCACCTGGGTATGCCACATGGGATGAAACTTCCATGCTGATGAATACCGGATCCAGTAAATCCATGACCTGTCAGGATGAACTCAACAATCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAGCAACAGTAGTCTCAGTGGTGTCGGGAACTCTAATAGAAGGATACCGACTTCTGAGATACCAAAACAAGGGAAACAAGCTCCGATGCTTCATGGTTTGCCGGACTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTTTTTGATCCAGATACAAATGGCCATGTCCAGAAGCTGAAAGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGCGAAACCTTACCGTCAACTTGTCTAGCCCTGACTTTGAGTCCATTAAAAAGGCATTGTCAACATATGATGTCAATGCCATGGCACAATTTGTTGATTTGTTAGCTAGGTCAAACATGAATGGAAGACTGAGGTTTTGTTTAGCCAGCAGCAAGACATGGGAGTGTGTTGCACTTGCTGTAAAGCCTGTAAATGTAACCGTAGTCCTTTGTAACCACAGCCAGGATAGTATATGTGAGAGAGCTGAAGAGCACAACATATTTTTCAGCTGA 1023 0.4194 MNSNNTSNSQSMPMATTPAPADGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPAFAYASSTNTLAPGYATWDETSMLMNTGSSKSMTCQDELNNLHGNEADIGSKGITQISNSSLSGVGNSNRRIPTSEIPKQGKQAPMLHGLPDFAEVYSFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFESIKKALSTYDVNAMAQFVDLLARSNMNGRLRFCLASSKTWECVALAVKPVNVTVVLCNHSQDSICERAEEHNIFFS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01082 340 ProSiteProfiles SANT domain profile. 36 89 IPR017884 -
Rops6g01082 340 MobiDBLite consensus disorder prediction 1 17 - -
Rops6g01082 340 MobiDBLite consensus disorder prediction 1 32 - -
Rops6g01082 340 PANTHER SWI/SNF COMPLEX-RELATED 5 259 - -
Rops6g01082 340 SMART sant 37 85 IPR001005 -
Rops6g01082 340 CDD SANT 40 83 IPR001005 -
Rops6g01082 340 Pfam Myb-like DNA-binding domain 38 83 IPR001005 -
Rops6g01082 340 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Rops6g01082 340 Gene3D - 41 88 - -
Rops6g01082 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 85 IPR006447 GO:0003677
Rops6g01082 340 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
Rops6g01082 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Rops6g01082 340 FunFam protein REVEILLE 6 isoform X1 40 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01082 Rops-Chr6 25306410 25310546 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops6g01082 Myb_DNA-binding 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01082 - - gmx:778050 475.322