Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01081 ATGGCTGCCGCAGCTGCACGTCCCCTCGTCACCGTTCAGTCCCTTGAGGGCGACATGGCCACCGACTCCGCACCCACTCTCCCCATCCCCGATGTCATGAGATCCTCCATTCGCCCCGACATCGTCAACTACGTTCATTCCAACATCTCCAAAAACAGCCGCCAGCCCTACGCCGTTAGCCGCCGTGCCGGTCATCAAACTTCCGCCGAATCCTGGGGAACCGGTCGCGCTGTCTCACGTATCCCTCGTGTCCCCGGTGGTGGAACCCACCGTGCCGGCCAGGGAGCCTTCGGAAACATGTGCCGTGGTGGTCGCATGTTTGCTCCAACCAAGATCTGGCGCCGCTGGCACCGTAAGATCAATGTGAATCAGAAGCGCTACGCCATCGTCTCCGCCATCGCCGCCTCCGCTATCCCCTCCCTTGTTCTGGCCCGCGGCCACCGGATCGAGTCGGTGCCTGAACTCCCACTCGTAGTGAGTGATTCCGCTGAAGGAGTTGAGAAAACAAAGGAAGCTATCAAGGTTTTGAAGCAGATCGGAGCTTTTCCTGATGCTGAAAAGGCTAAAGATAGCCACGGAATTCGTCCTGGGAAAGGGAAAATGCGAAACCGTCGCTATATCTCTCGCAGGGGACCTCTTGTGGTTTATGGTACTGAAGGTGCTAAAGCTGTTAAGGCTTTCAGGAATGTTCCTGGTGTTGAGATTGCTAATGTTGAAAGACTCAACCTTTTGAAGCTTGCACCTGGTGGGCACCTTGGAAGGTTTGTGATTTGGACTAAGTCTGCTTTTGAGAAGCTTGATTCTATTTATGGGTCGTTTGATAAGGTTTCTGAGAAGAAGAAGGGGTATGTGCTTCCAAGGCCCAAGATGGTAAATTCTGATTTGGCTAGGATTATTAACTCCGATGAGGTTCAGTCTGTTGTGAGGCCCATTAAGAAGGATGTGAAGAGGGCTACACTGAAGAAGAATCCTTTGAAGAATCTCAATGTGATGTTGAAGCTCAATCCTTATGCTAAGACTGCTAAGAGGATGGCTCTTCTTGCTGAGGCTCAGCGCCTTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCGGGTAAAGCATGGTATCACACCATGGTTTCAGATTCTGATTATACGGAATTCGACAACTTCACTAAGTGGTTGGGTGTTTCACAGTGA 1221 0.5168 MAAAAARPLVTVQSLEGDMATDSAPTLPIPDVMRSSIRPDIVNYVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAIVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNVPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKVSEKKKGYVLPRPKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAQRLKAKKEKLDKKRKTVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFTKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01081 406 MobiDBLite consensus disorder prediction 55 97 - -
Rops6g01081 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Rops6g01081 406 Coils Coil 343 373 - -
Rops6g01081 406 PANTHER 60S RIBOSOMAL PROTEIN L4 5 399 IPR045240 -
Rops6g01081 406 SUPERFAMILY Ribosomal protein L4 10 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Rops6g01081 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Rops6g01081 406 MobiDBLite consensus disorder prediction 55 74 - -
Rops6g01081 406 Pfam Ribosomal protein L4/L1 family 29 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Rops6g01081 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 354 IPR025755 -
Rops6g01081 406 FunFam 60S ribosomal protein L4 4 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01081 Rops-Chr6 25301813 25304324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01081 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.990 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01081 K02930 - gmx:100779764 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01081 6 25301813 25304324 Rops6g01081 6 25301813 25304324 ECH