Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01078 ATGGAGAGTAGGCTACCCTTCTTCTTCCTCTCCCCTCTTTCTCTCACGCTGCTACTTCTCTTGCATCTTTCCTATGCTCAGATGCCAGGTTTTGTAAGTTTGGACTGTGGAGGTAAAGAAAATTTCACTGATGAAATTGGTCTTAAATGGACTCCTGATGATAAACTTACTTTTGGAGAAATAAGCAATATTTCGGTTGCCAATGAGACACGGAAGCAATACACGACACTACGACACTTTCCTGCTGATTCCAGAAAATACTGCTACACACTTGACGTTGTCAGTAGGACAAGGTACCTACTGAGGGCAACATTCTTATATGGGAACTTTGATAGCAATGATGTTTATCCAAAATTTGACATTTCTGTTGGGGCTACACATTGGTCTACTATTGTTATATCTGATGCTAACACTATAGAAGCAAGAGAGCTTATATTTTTGGCTTCAAGTCCTACAGTTAGTGTATGTATATCAAATGCAACAACTGGGCAGCCATTCATATCTACGCTTGAACTCCGGCAATTCAATGGTTCAGTTTATTATACATACTATGAGGAACAATTTTACCTCAGTGTCTCTGCAAGGATAAATTTTGGTGCAGAGACCGATGCCCCAATCAGGTATCCTGATGACCCATTTGATAGAATTTGGGAGTCAGATTCTCTCAAGAAAGCAAATTATCTTGTTGATGTTGCTGCTGGAACTAAGAAAATTTCCACCAAAGTACCAATTGATGTTAATAGGGATGAAATGCCTCCAGTGAAAGTAATGCAGACAGCTGTTGTGGGTACAAATGGATCTCTAACTTACCGGTTGAACTTGGATGGTTTTCCAGGTATTGGATGGGCATTCAGCTATTTTGCCGAGATTGAAGATTTGCCTCAAAATGAATCCAGAAAATTCAGGCTAGTACTTCCAGGTCAGCCTGATATTAGTAAGGCGGTGGTAAATGTTGAAGAAAATGCTCCAGGAAAATATCGCCTTTATGAACCAGGATTTACCAATTTATCCCTACCCTTTGTGCTGTCCTTTAGATTTGGCAAAACATCTGATTCTTCCAGGGGCCCTCTTCTAAATGCCATGGAGATTAATAAATATGTGGAGAAAAATGATGGCTCTCCTGATGGAGAAGCTATATCTAGTGTACTTTCACACTACTCCTCAGCAGATTGGGCACAAGAAGGAGGTGACCCGTGTTTACCTGTTCCATGGTCATGGGTCCACTGCAGCTCAGATCTACAGCCAAGAATAGTTGCAATTTTGTTGTCTAATAAAAACTTGACGGGCAATATTCCTTTGGACATCACCAAACTGACTGGTCTGGTTGAACTGTGGCTTGATGGAAATATGCTGACCGGCCCAATACCAGATTTTACTGGATGCATGGACTTGAGGATAATTCATCTTGAGAACAATCAATTGGGGGGTGCGCTCCCAACCTCTTTGGCGAACCTTCCAAATTTAAGGGAACTGTATGTCCAAAATAACATGTTATCTGGAACTGTACCATCAGATCTTCTGAGCAAACATTTGGTTTTGAACTACTCCGGAAATATTAATCTTCACAAAGGAAGCAGAAAAAAGAGCCACATGTATGTGATTGTTGGTTCAGCAGTTGGTGGTGCCGTTTTACTCTTGGCTACTATTGTATCTTGCTTGTTAATGCATAAAGGAAAGAAAAAATATTTTGAGCAAGATCACCTTGTCTCTCTCCCTTCTCAAAGTCTGGATTCTTCTAAGGGCGATGGTCCTGCAGAAGCTTCCCACTGCTTCAGTTTTTCTGAAATTGAAAATTCTACAAATAATTTTGAGAAAAAAATTGGTTCTGGAGGTTTTGGTGTTGTTTACTATGGGAAACTGAAAGATGGAAAAGAGATAGCAGTTAAAGTTCTAACAAGTAATTCCTATCAAGGCAAACGAGAGTTCTCTAATGAGGTGAGTCTTCTTTCAAGAATACATCACAGAAACTTGGTACAGCTTCTTGGGTATTGCCGGGAAGAAGGGAATAGTATGCTTATTTATGAGTACATGCATAATGGAACTCTCAAGGAACATCTTTATGGCCCATTAACACGTGGACGAAGTATCAATTGGATTAAGCGCCTTGAGATTGCAGAAGATGCTGCCAAAGGGATTGAATATCTTCACACAGGCTGTGTTCCTGCAGTTATCCATAGGGACTTGAAGAGCAGCAACATTCTTCTTGACAAGGACATGAGAGCCAAGGTTTCAGATTTTGGTCTTTCCAAACTTGCTGTTGATGGGGTCTCCCATGTCTCTAGTATAGTTCGGGGGACAGTAGGATATCTGGATCCTGAGTACTATATTTCCCAGCAGCTGACTGATAAGAGTGATATTTATAGTTTTGGCGTGATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATCTCTAATGACAGCTTTGGTGCTAATTGCCGAAACATAGTACAGTGGGCAAAATTACACATTGAGAGTGGAGATATACAAGGTATCATTGATCCTGTGCTAGGGAATGACTATGACCTACAATCAATGTGGAAAATAGCGGAGAAAGCATTGATGTGTGTTCAACCTCATGGACAAATGAGGCCATCAATTTCAGAAGTAGTGAAGGAGATCCAAGATGCAATCACTGTTGAGAGAGAGGCAGAAGTAAATTCCCCAAGAAATTCAGTTCACTCTTCCATCAACATGGGTTCTATGGATCTCGCTGCAACCGAGAATTTTCTATCAATAGATGATTCCATTGCACAGCCTATAGCAAGATAG 2769 0.4066 MESRLPFFFLSPLSLTLLLLLHLSYAQMPGFVSLDCGGKENFTDEIGLKWTPDDKLTFGEISNISVANETRKQYTTLRHFPADSRKYCYTLDVVSRTRYLLRATFLYGNFDSNDVYPKFDISVGATHWSTIVISDANTIEARELIFLASSPTVSVCISNATTGQPFISTLELRQFNGSVYYTYYEEQFYLSVSARINFGAETDAPIRYPDDPFDRIWESDSLKKANYLVDVAAGTKKISTKVPIDVNRDEMPPVKVMQTAVVGTNGSLTYRLNLDGFPGIGWAFSYFAEIEDLPQNESRKFRLVLPGQPDISKAVVNVEENAPGKYRLYEPGFTNLSLPFVLSFRFGKTSDSSRGPLLNAMEINKYVEKNDGSPDGEAISSVLSHYSSADWAQEGGDPCLPVPWSWVHCSSDLQPRIVAILLSNKNLTGNIPLDITKLTGLVELWLDGNMLTGPIPDFTGCMDLRIIHLENNQLGGALPTSLANLPNLRELYVQNNMLSGTVPSDLLSKHLVLNYSGNINLHKGSRKKSHMYVIVGSAVGGAVLLLATIVSCLLMHKGKKKYFEQDHLVSLPSQSLDSSKGDGPAEASHCFSFSEIENSTNNFEKKIGSGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVSLLSRIHHRNLVQLLGYCREEGNSMLIYEYMHNGTLKEHLYGPLTRGRSINWIKRLEIAEDAAKGIEYLHTGCVPAVIHRDLKSSNILLDKDMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDIYSFGVILLELISGQEAISNDSFGANCRNIVQWAKLHIESGDIQGIIDPVLGNDYDLQSMWKIAEKALMCVQPHGQMRPSISEVVKEIQDAITVEREAEVNSPRNSVHSSINMGSMDLAATENFLSIDDSIAQPIAR* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01078 922 PANTHER OS07G0107800 PROTEIN-RELATED 464 877 - -
Rops6g01078 922 SUPERFAMILY L domain-like 402 518 - -
Rops6g01078 922 FunFam Leucine-rich repeat protein kinase family protein 377 527 - -
Rops6g01078 922 Gene3D Transferase(Phosphotransferase) domain 1 677 897 - -
Rops6g01078 922 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 677 886 - -
Rops6g01078 922 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Rops6g01078 922 Gene3D Phosphorylase Kinase; domain 1 577 676 - -
Rops6g01078 922 ProSiteProfiles Protein kinase domain profile. 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01078 922 SUPERFAMILY Protein kinase-like (PK-like) 587 871 IPR011009 -
Rops6g01078 922 Gene3D Ribonuclease Inhibitor 377 531 IPR032675 -
Rops6g01078 922 SMART serkin_6 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01078 922 CDD STKc_IRAK 607 874 - -
Rops6g01078 922 Pfam Malectin-like domain 34 364 IPR024788 -
Rops6g01078 922 Pfam Protein tyrosine and serine/threonine kinase 603 803 IPR001245 GO:0004672|GO:0006468
Rops6g01078 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Rops6g01078 922 FunFam Leucine-rich repeat receptor-like protein kinase 577 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01078 Rops-Chr6 25257468 25264588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01078 24 711 Receptor kinase-like Gene Family AT2G37050 68.633 0.0 1009
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Rops6g01078 Malectin_like 5.6e-75 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01078 - - gmx:100798007 1645.94