Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01077 ATGGCCGATTCTCCGGCGAGTCCAGGCGGCGACAACAGCCCCCGCTCCAATTTCCGAGAGCAGGACCGGTACCTTCCGATTGCCAACATCAGCCGTATCATGAAGAAGGTGCTTCCCGCCAACGGAAAAATCTCCAAGGACGCTAAAGAAACCGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCAGCGAGGCTAGCGATAAGTGCCAGAGAGAGAAGAGAAAAACCATTAACGGTGACGATTTGCTTTGGGCAATGGCCACTCTTGGTTTCGAGGATTATATTGATCCTCTCAAAATTTACCTAGCACAATACAGAGAGATTGAGGGTGATACCAAGGGCTCGGCCAAGGGGGGAGATGCATCTGCTAAGAAAGATATTCATCCGAGTCTTAATGCCCAGCTTGCTCATCAAGGTTCCTTCTCCCAAGTTGTTAATTACACTAATTCTCAGCCTCATGCTCAACATATGATGGTTCCCATGCAAGGCCCAGAATAG 504 0.494 MADSPASPGGDNSPRSNFREQDRYLPIANISRIMKKVLPANGKISKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLAQYREIEGDTKGSAKGGDASAKKDIHPSLNAQLAHQGSFSQVVNYTNSQPHAQHMMVPMQGPE* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01077 167 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g01077 167 FunFam Nuclear transcription factor Y subunit B-3 13 137 - -
Rops6g01077 167 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops6g01077 167 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Rops6g01077 167 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Rops6g01077 167 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Rops6g01077 167 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Rops6g01077 167 Gene3D Histone, subunit A 12 147 IPR009072 GO:0046982
Rops6g01077 167 SUPERFAMILY Histone-fold 21 122 IPR009072 GO:0046982
Rops6g01077 167 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01077 Rops-Chr6 25251181 25254295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01077 9 165 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.019 2.09e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops6g01077 CBFD_NFYB_HMF 2.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01077 K08065 - csav:115711255 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01077 6 25251181 25254295 Rops6g01077 6 25251181 25254295 ECH
Rops11g02260 11 37940613 37942575 Rops6g01077 6 25251181 25254295 ECH
Rops8g03271 8 71248830 71252445 Rops6g01077 6 25251181 25254295 PCT