Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01069 ATGGGGAGGAAAGGAAATTGGTTTTCCTCAGTGAAGAAAGCTCTCAACCCTGAGTCAAAGGAGAAGAAAGAGCAGAAATCAAGTAAATCAGAGAAGAAATGGTTTAGGAAGCGAACATCGCGGACTCCAGACCCACACTTGGAAACTGATCAAGCCCCTCCTCTTCCTCCACCTGGGGAGATTATTTTAACTCATGTTGAGGATGAAAACAGTCATGATCATGTTGAAATTGCAACTGCTGTGGATGTTGAGAGACCTGTTCCTGCTGTTCAGATAGCAGCTGCTGAGGTTCAAGCCACTACAATTGTTCAGTTTGCCGGTAAACCAAAGGATGAAGTAGCAGCAATCAAGATTCAAACAGCCTTTCGGGGATACTTGGCAAGAAGAGCATTGCGTGCTTTGAGGGGGCTGGTCAGGTTGAAATCACTGATGGAAGGGCCAGTGGTAAAGCGGCAAGCCATTAGTACCCTTCGCTCTATGCATACTTTAGCTCATGTGCAATCTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAGCCAAGCTCTGCAAAAACAGCTCTTACAGAAGCATGCAAAAGAACTAGAGAGCATGCGGATTGGGGAGGAATGGGATGACAGCCTACAATCAAGAGAACAGATTGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGAAGAGAAAAAGCAATGGCTTATTCATTCTCACATCAGCAAAACTGGAAGAATTCATCAAGATCTGTAAACCCAATGTTCATGGATCCAACCAATCCTACCTGGGGTTGGAGCTGGTTGGAAAGATGGATGGCAGCTAGGCCATGGGAGAGCCATGGCCTAATGGAGAAAGAGAAGAATGACCATTCATCTGTAAAAAGTTCAAACCGCAGCATTACCAGTGCTGAAATCAGCAAATCATTTGCACGTTTCCAGCTCAATTCTGAAAAGCAATCTCCAACAGCCAGCCAAACTCCAGGTTCACCTAGCTTCCAGTCTCATTCAAATCCTCCCAAGCCAGCAGTTGGTAAGAAACTAAAGAAAGCAAGCCCAAAGGACATCCATGCTATGGATGATGACACCAAAAGCATGGTGAGTGTGCAGTCAGACCGGACCCGGAGGCACTCCATTGCTGGATCAATTGTTAGAGATGATGAAAGCCTTGCAAGCTCTCCATCAGTTCCAAGTTACATGGTGCCAACTAAATCTGCTAAAGCTAAGTCCAGGATGCAAAGTCCATTAGCTGCAGAGAATGGTACCCCAGAGAAAGGGTCCTTTGGAACTGCAAAGAAAAGGCTCAGTTTCCCAGCTTCACCTGCCAGACCAAGGAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTGAATGCTGAAATCACTGTTGGAAATGGTGTGGCTGGTTGA 1404 0.4615 MGRKGNWFSSVKKALNPESKEKKEQKSSKSEKKWFRKRTSRTPDPHLETDQAPPLPPPGEIILTHVEDENSHDHVEIATAVDVERPVPAVQIAAAEVQATTIVQFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKSLMEGPVVKRQAISTLRSMHTLAHVQSQIRSRRLRMLEESQALQKQLLQKHAKELESMRIGEEWDDSLQSREQIEAKLLSKYEAAMRREKAMAYSFSHQQNWKNSSRSVNPMFMDPTNPTWGWSWLERWMAARPWESHGLMEKEKNDHSSVKSSNRSITSAEISKSFARFQLNSEKQSPTASQTPGSPSFQSHSNPPKPAVGKKLKKASPKDIHAMDDDTKSMVSVQSDRTRRHSIAGSIVRDDESLASSPSVPSYMVPTKSAKAKSRMQSPLAAENGTPEKGSFGTAKKRLSFPASPARPRRHSGPPKVESSLNAEITVGNGVAG* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01069 467 Pfam Protein of unknown function (DUF4005) 380 445 IPR025064 -
Rops6g01069 467 MobiDBLite consensus disorder prediction 15 45 - -
Rops6g01069 467 MobiDBLite consensus disorder prediction 313 467 - -
Rops6g01069 467 MobiDBLite consensus disorder prediction 346 369 - -
Rops6g01069 467 MobiDBLite consensus disorder prediction 1 59 - -
Rops6g01069 467 Gene3D - 33 137 - -
Rops6g01069 467 PANTHER IQ-DOMAIN 5-RELATED 1 448 - -
Rops6g01069 467 Pfam IQ calmodulin-binding motif 114 132 IPR000048 GO:0005515
Rops6g01069 467 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Rops6g01069 467 SMART iq_5 110 132 IPR000048 GO:0005515
Rops6g01069 467 MobiDBLite consensus disorder prediction 313 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01069 Rops-Chr6 25136168 25141033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01069 1 466 IQD Protein Family AT5G03040 53.209 7.95e-150 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01069 - - gmx:100799058 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01069 6 25136168 25141033 Rops6g01069 6 25136168 25141033 ECH
Rops8g03277 8 71339795 71346749 Rops6g01069 6 25136168 25141033 PCT