Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01058 ATGGCTTCACAAAACCAAACAGAGGAAGAAAATCCAAAGCGAAATTGGTCTCTCGAAGATTTCGAGATTGGTAAACCTCTCGGCAAAGGCAAATTCGGCAGAGTCTACGTCGCCAGAGAAATCAAGAGCAAATTTATTGTGGCATTGAAGGTTCTTTTTAAGGAACAAATTGAGAAGTACAGGATTCAGCATCAACTGAGGAGAGAGATGGAGATACAGAGCGGTCTTCGTCACCCAAACGTTCTGCGTCTCTATGGTTGGTTTCATGATGCTGAGCGTGTTTTCTTGATCCTTGAGTATGCTCATAATGGTGAGCTTTACAAGGAACTAAGAAAAAAAGGGCATCTCACTGAGAAGCAAGCTGCCACATATATTCTGAGCCTCACAAAGGCGTTGGCTTATTGTCACGAGAAGCATGTTATTCATAGGGACATCAAGCCCGAAAATTTGTTACTTGACCATGAGGGTCGTCTTAAAATTGCGGATTTTGGTTGGTCTGTACAGTCTAGAAGCAAAAGACATACCATGTGTGGAACATTGGATTATTTAGCACCGGAAATGGTTGAAAACAAAGCTCATGACTATGCAGTTGATAACTGGACTCTTGGTATCCTTTGTTATGAGTTCCTCTATGGTGTACCTCCATTTGAGGCTGAGAGTCAAACTGATACCTTCAAAAGGATAATGAAGGTGGACCTAAGCTTCCCTTCCACTCCTTCTGTTTCTTTAGATGCCAAAAATCTGATTAGTCGGCTCCTGGTGAAAGATTCCTCACAGAGGCTCTCTCTTCAAAAGATAATGGAACATCCTTGGATAATCAAGAATGCAAATCCCATAGTTGGGAGGTCCAAACATAGAGATGAAGACTGGGCTAAGGGACAGCAAAGAAAGCTATGCAACAGTGGTGGAAGACTTCATTCCAAACCATAA 930 0.4226 MASQNQTEEENPKRNWSLEDFEIGKPLGKGKFGRVYVAREIKSKFIVALKVLFKEQIEKYRIQHQLRREMEIQSGLRHPNVLRLYGWFHDAERVFLILEYAHNGELYKELRKKGHLTEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGVPPFEAESQTDTFKRIMKVDLSFPSTPSVSLDAKNLISRLLVKDSSQRLSLQKIMEHPWIIKNANPIVGRSKHRDEDWAKGQQRKLCNSGGRLHSKP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01058 309 Pfam Protein kinase domain 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01058 309 SMART serkin_6 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01058 309 FunFam Serine/threonine-protein kinase ark1 13 286 - -
Rops6g01058 309 FunFam Aurora kinase A 13 104 - -
Rops6g01058 309 SUPERFAMILY Protein kinase-like (PK-like) 15 278 IPR011009 -
Rops6g01058 309 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Rops6g01058 309 ProSiteProfiles Protein kinase domain profile. 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01058 309 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Rops6g01058 309 CDD STKc_Aurora 20 272 - -
Rops6g01058 309 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Rops6g01058 309 Gene3D Transferase(Phosphotransferase) domain 1 105 302 - -
Rops6g01058 309 PIRSF ILK 1 285 - -
Rops6g01058 309 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 8 284 IPR030616 GO:0004672
Rops6g01058 309 MobiDBLite consensus disorder prediction 284 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01058 Rops-Chr6 24937416 24952125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01058 8 283 CBL-interacting serine-threonine protein kinases AT2G25090 40.000 3.42e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Rops6g01058 Pkinase 6.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01058 K08850 - gmx:100800111 530.791