Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01055 ATGAGTGTGATTGACATTCTAACAAGAGTTGATTCCATTTGCAAGAAGTACGACAAATACGATTTCGAAAAGCACAAGGATGGCAATGTCTCCGGCGACGATGCCTTTGCCAGACTCTACGCTGAAGTCGATGCCGACATCGAGGCCCTGATTCAGAAAGCAGAAATGGCTTCCAAGGATAAAGGTAAGGCATCTGCTGTAGCGATCAATGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTAGAGGAGGTTCCAAAGTTGCAGAGGTTGGCTATGAAAAAGGTAAAGGGGCTTTCATCACAAGAATTTGCTGCGCGTAATGATTTGGCTCTTGCATTGCCAGAGAGAATCCAAGCTATCCCTGACGGGACTCCTGCTGTGCCAAAACAAACTGGAGGCTGGGCAACTTCTGGCTCACGTCCTGAAATTAAATTTGATTCAGATGGGCGATTTGACGATGAATACTTTCAACAAACTGAGGAATCAAGTCAATTCAGGCAGGAATATGAAATGCGTAAAATAAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGATTGGATACATTAAAAAACATGGCTAGTGATATGAATGAGGAAATGGATAGACAAGTTCCCCTGATGGATGAGATTGACACTAAGGTTGACAAGGCATCCTCTGACCTTAAGAATACCAATGTTAGACTTAAAGACACAGTGAACCAGCTTCGATCCAGTCGAAACTTCTGCATCGATATTGTTTTGTTGATTATAATTCTGGGGATTGCTGCCTACTTATACAATGTATTAAAGAAATGA 798 0.4273 MSVIDILTRVDSICKKYDKYDFEKHKDGNVSGDDAFARLYAEVDADIEALIQKAEMASKDKGKASAVAINAEIRRTKARLLEEVPKLQRLAMKKVKGLSSQEFAARNDLALALPERIQAIPDGTPAVPKQTGGWATSGSRPEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKIKQDQGLDVIAEGLDTLKNMASDMNEEMDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01055 265 PANTHER SYNTAXIN 57 252 IPR045242 -
Rops6g01055 265 Gene3D - 170 231 - -
Rops6g01055 265 SMART tSNARE_6 165 232 IPR000727 -
Rops6g01055 265 MobiDBLite consensus disorder prediction 121 150 - -
Rops6g01055 265 CDD SNARE_Qc 175 230 - -
Rops6g01055 265 Pfam SNARE domain 207 256 IPR000727 -
Rops6g01055 265 FunFam Putative syntaxin-71-like 170 231 - -
Rops6g01055 265 SUPERFAMILY SNARE fusion complex 163 230 - -
Rops6g01055 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01055 Rops-Chr6 24908220 24914508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01055 1 264 SNARE and Associated Proteins AT3G09740 77.068 2.00e-155 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01055 K08506 - gmx:100819272 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01055 6 24908220 24914508 Rops6g01055 6 24908220 24914508 ECH