Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01054 ATGTGCGTGTGGTGGCCCATCAAAATATATGGCTCACCGTCTTTGAGGATACCAGTAAATAAGATGAGAAAGAGACTAGTCCCAAGACCAAAGGCAGCAAGAGAGAGCAATAAGAGAGAGAAGAGCTGTTTGCTTCTGCTTTCTGCTTTACTAGCCACCACCACTGAACCCTTTTCCTATTTAGCTTCTTCACTTTTATCTAATATACAAATGATGCCCGGTGACCCCTTTTTGCTATCAACTTCGATCGGAGGGTTTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATCCTCCTCCGGTTGCCAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCCCCAAAGACCCTTATGGCCACAAACCGTTTCATCTGTGAAATATGTAACAAAGGGTTCCAAAGAGACCAAAACCTTCAACTTCACCGAAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAGGAGGTTCGGAAGAAGGTTTACATCTGTCCAGAGAAGACCTGTGTCCACCATGACCCTGCAAGGGCACTCGGTGATCTCACAGGTATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAATGTTCTAAGAAATACGCTGTCCAATCTGATTGGAAAGCTCACACCAAAACATGTGGCACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACTCACAGAGCTTTCTGTGATGCCTTGGCTGAAGAGAGTGCAAGAATAACCTCAGTTGCTACAACGAATCTAAATTTTAAGAACGAAGAAACTGGACTAATTTCTGGTCAGGGACTTCAAAATATAGCTGCTATTCCACAGTTTGGTCCACATGGTTTTCGTTTAGATTTTAATGGAATTGGCATGAATGGAAACAACTGTTTGATGGGTTCAGAGCAACAAAGGCCAAGCTTGTCACTATGGTTGAACCAGCAAGGGAATCCACAGCCTCAAGATGTGGGACCCAATTCTGGGATTTATGTGTCTTCTTCAGGTTTGCCTGAGATTGTGCAAATGGCTGCACAGGCTAATAATACCTTGATTGGCTCTTCATCAATGTTATCTAATTTTGGAGTGCCTGCTTCCAATTCAACCACCTCAAACCTTTCTTTATCATCACTGCCTATTGGGAAAAGAGGAGAAGGTGGAACTGTAGATCTGGCATCTATTTATTCTGAGGGTCAAAACAAGCAATCAAAGCCTGCTTCTCCCATGTCAGCCACTGCACTTCTTCAGAAAGCAGCTCAGATGGGTTCCACTAGAAGCAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGTGCCATGACCTCACAAACTACCACTCTCAACAATAATAATAATAATGCCAACCATGACCGTAATAACCAGGCTTTTCAGCAAGCTGAGAATTTTACTTCCAATGGCAGTGCAGCCATGTTGGGAAGTAGTGCTACTAATTTTAGCTCATTGACGCATTCATCAAACGGTTTTGATCAACTTGTGATGCAAACCAATGGGCAACAAAATGAGCCAGTGAAATTGAAGCTCCACCCTGGTTCAGAACATAGTTTGACAAGAGATTTTCTTGGTGTGAGTGGAGGAGGAGGTGGAGCTGGCCCTCAATTCCTACCTCAAGAGCTGGCAAAGTTTGCAAACCAATGGGGTTGA 1725 0.4423 MCVWWPIKIYGSPSLRIPVNKMRKRLVPRPKAARESNKREKSCLLLLSALLATTTEPFSYLASSLLSNIQMMPGDPFLLSTSIGGFTQEQNTNPNPKPNPPPVAKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSVATTNLNFKNEETGLISGQGLQNIAAIPQFGPHGFRLDFNGIGMNGNNCLMGSEQQRPSLSLWLNQQGNPQPQDVGPNSGIYVSSSGLPEIVQMAAQANNTLIGSSSMLSNFGVPASNSTTSNLSLSSLPIGKRGEGGTVDLASIYSEGQNKQSKPASPMSATALLQKAAQMGSTRSSTNPSIFSGSFGAMTSQTTTLNNNNNNANHDRNNQAFQQAENFTSNGSAAMLGSSATNFSSLTHSSNGFDQLVMQTNGQQNEPVKLKLHPGSEHSLTRDFLGVSGGGGGAGPQFLPQELAKFANQWG* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01054 574 FunFam protein indeterminate-domain 12-like 113 181 - -
Rops6g01054 574 Gene3D Classic Zinc Finger 188 267 - -
Rops6g01054 574 Pfam Zinc-finger double-stranded RNA-binding 134 156 IPR022755 -
Rops6g01054 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 156 IPR013087 -
Rops6g01054 574 MobiDBLite consensus disorder prediction 420 451 - -
Rops6g01054 574 SUPERFAMILY beta-beta-alpha zinc fingers 133 230 IPR036236 -
Rops6g01054 574 Gene3D Classic Zinc Finger 112 186 - -
Rops6g01054 574 MobiDBLite consensus disorder prediction 83 117 - -
Rops6g01054 574 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Rops6g01054 574 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 93 556 IPR031140 -
Rops6g01054 574 SMART c2h2final6 175 205 IPR013087 -
Rops6g01054 574 SMART c2h2final6 134 156 IPR013087 -
Rops6g01054 574 SMART c2h2final6 210 230 IPR013087 -
Rops6g01054 574 FunFam protein indeterminate-domain 5, chloroplastic-like 188 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01054 Rops-Chr6 24880954 24883469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01054 69 570 IDZ Gene Family AT5G03150 48.535 5.54e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g01054 zf-C2H2_jaz 8.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01054 K25870 - gmx:100811274 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01054 6 24880954 24883469 Rops6g01054 6 24880954 24883469 ECH
Rops8g03293 8 71472263 71474693 Rops6g01054 6 24880954 24883469 PCT