Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01053 ATGGCAACTAAAGAAGCTGCAGGCTTTTCCGAGGATAATAACCAAGGCCCTGGCACAATTGAAAATGGAACTGATGTCTCAATTCAAAAGGGTCTAGCATCATCTGAAATAACCGAGGATCTCCCTAGTGGACAACATGGAACAAGGCAAAACATAATCTTGGAGATACCAACAAGAACTCGGAAGGAAGCAAGAGACGATTTTTTGAGAATAAACATGCCTCTAACTCCATCTCCAAGAAGAGTGATTTTTTCTCCTGGTCCAAGTCCTGGTTTCTCCAGAAGCAATGAATCCCCAGGCCCCTCCTCATCAAAAAATAGACCAACTATTAAAACCCTTCTTCCCAAACTCAGCTTTAAATTTCGCAACACAAGTTCAGAGATTGAAAAGGCTGCCTTCCTAGCACTTGAAGGTTCAGCCACAGTGGCACCAAAAAAGCCATTTCTTTCAAGGACATTATCTCGTATCAAATCTAGAGGGAAGAAAACATCATCCTTACCTGCAACCCCAATTGCTCATTCAACTCCAGGATCTGTACATGGAGGGAACATGGCTTATCCTGCAATAGCTGATGAGAAAGGACTACAATTACCAATTCATCGTTCCCGGTCAGTTCCTTCATTTACTGAATTAGGTAACAACACACCTATAGGTGGCATATTTCGTATAGTTCCAACCATACCACAATTGGGTGAGAAAATTGCCACAACACCTATGACATCTCCAACTGTTGATACTGCTGAAAACGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCTGATACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAGAATTAAAGGTAATAGAACATGTGATGTATGCAAGCAAGAAGTTCAGAACCTACCTGTCACTCTTTTACGAGTTCAAACTGTTCGGGCTAACTTGCTGGGGAGCAGAGCTGAGACTTCTCGCTACAGGGTTTGGCAGGATTCTCCCATTCTTGTCGTTGTTAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAACATGGGATCTAGTGCTGTTGCCATGTCTCTCCCATTTTCTTGTATACTGGGTCTTCTTGCAAGCATGACAGCTACAACAATGGTTAGGAGAAAACATGTTTGGATCTATGCAACTGTTCAGTTTGGTTTGGTGGTTCTCGCTGGACATCTTTTCTTCTCATTGGCTCATATGGAAGCTGTTATAGCTATCCTACTAGCTACATTTGCTGGGTTTGCGGCTGCAATGTGTGGAGCTTCTTTTCTTATGGAGATTTTGAAGTGGAGGAGAACATGGCTTGCTCAGTCGAATCAACAAGAAGGTTCCCAAGAGGTGGCATCACCTGATCAATCATCTGCAGCCAATCATCAAGCTCAGACATAG 1467 0.4274 MATKEAAGFSEDNNQGPGTIENGTDVSIQKGLASSEITEDLPSGQHGTRQNIILEIPTRTRKEARDDFLRINMPLTPSPRRVIFSPGPSPGFSRSNESPGPSSSKNRPTIKTLLPKLSFKFRNTSSEIEKAAFLALEGSATVAPKKPFLSRTLSRIKSRGKKTSSLPATPIAHSTPGSVHGGNMAYPAIADEKGLQLPIHRSRSVPSFTELGNNTPIGGIFRIVPTIPQLGEKIATTPMTSPTVDTAENEDGGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHQECAVKWFRIKGNRTCDVCKQEVQNLPVTLLRVQTVRANLLGSRAETSRYRVWQDSPILVVVNMLAYFCFLEQLLVSNMGSSAVAMSLPFSCILGLLASMTATTMVRRKHVWIYATVQFGLVVLAGHLFFSLAHMEAVIAILLATFAGFAAAMCGASFLMEILKWRRTWLAQSNQQEGSQEVASPDQSSAANHQAQT* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01053 488 MobiDBLite consensus disorder prediction 467 488 - -
Rops6g01053 488 CDD RING_CH-C4HC3_MARCH 263 311 - -
Rops6g01053 488 PANTHER OS02G0165000 PROTEIN 30 475 - -
Rops6g01053 488 MobiDBLite consensus disorder prediction 8 51 - -
Rops6g01053 488 MobiDBLite consensus disorder prediction 159 184 - -
Rops6g01053 488 SMART ringv_2 262 311 IPR011016 GO:0008270
Rops6g01053 488 MobiDBLite consensus disorder prediction 1 51 - -
Rops6g01053 488 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Rops6g01053 488 MobiDBLite consensus disorder prediction 77 109 - -
Rops6g01053 488 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Rops6g01053 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Rops6g01053 488 MobiDBLite consensus disorder prediction 89 109 - -
Rops6g01053 488 SUPERFAMILY RING/U-box 259 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01053 Rops-Chr6 24859011 24866430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01053 257 317 C3H Transcription Factor Family AT2G37950 41.935 1.35e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01053 - - gmx:100787963 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01053 6 24859011 24866430 Rops6g01053 6 24859011 24866430 ECH