Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01051 ATGGGTAATATGGGAAGTAGTGGCGGTAACAACCGTCGGAGACACGGCGGCAGCGGCCGCCGGATTCATCCGCCAGTGACGCCGCAGCCTGAAGTCGCGGCCAACCGATTCGTGTACCCCGCCGCCGCTACTCCGTACCATAACTACCCCGGTTACTATCCCCCGCCGCCGACAACTGTACCGGTGCCTTTGCCGGCGCCGTACGACCACCATCACCGTCCGGCGGTGGACCCAAGGTGGCATTACCCCCCGCCGCCGCTGCCACTTCCACCGGCGCCTTATGTGGAGCATCAAAAGGCGGTTACTATAAAGAACGATGTGAACATCATGAAGGAGACTCTGAGGATTGAGCCTGATGAGGAAAATCCAGGGCATTTTCTTGTGTCATACACGTTTAATGCCACAGTTTCTGGGAGCATCACCATACTTTTCTTCGCAAAAGAAGGTGAAGGCTGCACCCTTACCCCAATGAAGGAAAATGTTCTTCCACCCGTTACTGTGAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACCGGAATCAATTTTTCAATGTTCGAGGAGTCTGAGTTATTGAAAGTGGGTGACATGGATGTCTATCCTGTAGCAGTTAAAGCAGATGCATCCTCTGGCGACCATGATGGATCAAATGAAACTCCAACATCTGGTAGCACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTATGGGTGAGTGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAATGACTTGGATGGCAATGATCCTGGAAAAGAGTGTGTTATCTGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCTGTTGAGAGGCTTTTGGAGATCAAAGTCGGGCCTGAGCCTGAGGAGTGA 1029 0.5083 MGNMGSSGGNNRRRHGGSGRRIHPPVTPQPEVAANRFVYPAAATPYHNYPGYYPPPPTTVPVPLPAPYDHHHRPAVDPRWHYPPPPLPLPPAPYVEHQKAVTIKNDVNIMKETLRIEPDEENPGHFLVSYTFNATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFRQPAGTGINFSMFEESELLKVGDMDVYPVAVKADASSGDHDGSNETPTSGSTNSQITQAVFEKEKGEFRVKVVKQILWVSGMRYELQEIYGIGNSVENDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01051 342 PANTHER MAHOGUNIN 1 335 IPR045194 GO:0061630
Rops6g01051 342 MobiDBLite consensus disorder prediction 1 31 - -
Rops6g01051 342 Pfam Zinc finger, C3HC4 type (RING finger) 284 330 - -
Rops6g01051 342 SMART ring_2 286 324 IPR001841 -
Rops6g01051 342 FunFam probable E3 ubiquitin-protein ligase LOG2 270 335 - -
Rops6g01051 342 SUPERFAMILY RING/U-box 285 331 - -
Rops6g01051 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 335 IPR013083 -
Rops6g01051 342 ProSiteProfiles Zinc finger RING-type profile. 286 325 IPR001841 -
Rops6g01051 342 MobiDBLite consensus disorder prediction 217 231 - -
Rops6g01051 342 CDD mRING-HC-C3HC5_MGRN1-like 284 325 IPR045195 -
Rops6g01051 342 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01051 Rops-Chr6 24836647 24842391 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01051 91 305 C3H Transcription Factor Family AT3G09770 65.766 2.19e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01051 - - gmx:100789032 561.992