Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01049 ATGGGTAATATGGGAAGTAGTGGCGGTAACAACCGTCGGAGACACGGCGGCAGCGGCCGCCGGATTCATCCGCCAGTGACGCCGCAGCCTGAAGTCGCGGCCAACCGATTCGTGTACCCCGCCGCCGCTACTCCGTACCATAACTACCCCGGTTACTATCCCCCGCCGCCGACAACTGTACCGGTGCCTTTGCCGGCGCCGTACGACCACCATCACCGTCCGGCGGTGGACCCAAGGTGGCATTACCCCCCGCCGCCGCTGCCACTTCCACCGGCGCCTTATGTGGAGCATCAAAAGGCGGTTACTATAAAGAACGATGTGAACATCAAGAAGGAGAATCTGAGGATTGAGCCTGATGAGGAAAATCCAAGGCATTTTCTTGTGTCATTCACGTTTGATGCCACAGTTTCTGGGAGCATCACCATACTTTTCTTCGCAAAAGAAGGTGAAGGTTGCACCCTTACCCCAATGAAGGAAAATGTTCTTCCACCCGTTACTGTGAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACCGGAATCAATTTTTCAATGTTTGAGGAGTCTGAGTTATTGAAAGTGGGTGACATGGATGTCTATCCTGTAGCAGTTAAAGCAGATGCATCCTCTGGCGACCATGATGGATCAAATGAAACTCCAACATCTGGTAGCACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTTGAGGTTGTTAAGCGGATATTATGGGTGAATGGAATGAGGTATGAGCTGCAGGATATATATGGTATTGGAAATTCAGTGGAGAATGACTTGGATGGCAATGATCCTGGAAAAGAGTGCGTTAACTGCTTGTCAGAGCTTCGGGACACAATTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGCCAACCTGTTGAGAGGCTTTTGGAGATCAAAGTCGGGCCTGAGCCTGAGGAGTGA 1029 0.5044 MGNMGSSGGNNRRRHGGSGRRIHPPVTPQPEVAANRFVYPAAATPYHNYPGYYPPPPTTVPVPLPAPYDHHHRPAVDPRWHYPPPPLPLPPAPYVEHQKAVTIKNDVNIKKENLRIEPDEENPRHFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFRQPAGTGINFSMFEESELLKVGDMDVYPVAVKADASSGDHDGSNETPTSGSTNSQITQAVFEKEKGEFRVEVVKRILWVNGMRYELQDIYGIGNSVENDLDGNDPGKECVNCLSELRDTIVLPCRHMCMCSGCAKVLRFQTNRCPICSQPVERLLEIKVGPEPEE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01049 342 PANTHER MAHOGUNIN 1 335 IPR045194 GO:0061630
Rops6g01049 342 SUPERFAMILY RING/U-box 285 330 - -
Rops6g01049 342 CDD mRING-HC-C3HC5_MGRN1-like 284 324 IPR045195 -
Rops6g01049 342 MobiDBLite consensus disorder prediction 1 33 - -
Rops6g01049 342 FunFam probable E3 ubiquitin-protein ligase LOG2 270 335 - -
Rops6g01049 342 Pfam Zinc finger, C3HC4 type (RING finger) 284 330 - -
Rops6g01049 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 335 IPR013083 -
Rops6g01049 342 MobiDBLite consensus disorder prediction 217 231 - -
Rops6g01049 342 ProSiteProfiles Zinc finger RING-type profile. 286 325 IPR001841 -
Rops6g01049 342 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01049 Rops-Chr6 24808960 24814685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01049 91 305 C3H Transcription Factor Family AT3G09770 64.865 8.29e-97 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01049 - - gmx:100789032 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01049 6 24808960 24814685 Rops6g01049 6 24808960 24814685 ECH
Rops8g03302 8 71621138 71624494 Rops6g01049 6 24808960 24814685 PCT