Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01048 ATGTTCCTTCTCATTTTCTTCACACGCTCTCCTTCTCCTTCTCCAAAACCTTCATATATAGACTCAAACCAAACCCGAGACCCCATGAAGTGTTGTGTTTTTCCTCGAGCCATGAAGATTTCCTATTTCGGTTGTTTCTCTGCATCCACCAAAGAACAAAACAACAACGACTATCCAGAAGGAGAGAATGGTGGAAGCTTTTGTGTATTCACTTATAACCAATTGAAATCCGCCACTAGTAATTTTAGTGACAAGGTTGGAGAAGGTGGCTTTGGGTCTGTCTATAAGGGGAGGCTTAAAGATGGCTCTTTTGTGGCAGTGAAAGTGCTTTCAGTTGAGGTTGAATCCATGCGAGGAGAGAGGGAATTTGTAGCAGAATTGTCCACTCTCGCTAATATCAAGCACCAAAATCTAGTAAGCCTTAAAGGGTGTTGTGTGGAAGGAGCACGCAGATATTTAGTCTATGATTACATGGAGAACAACACCCTCCACCACGCTTTCTTAGGTTCGGAGGAGAGAAGGATAAGATTCAGCTGGGAAGCAAGGAAGGACACATCCATAGGTGTGGCTCGAGGACTTGTTTTTCTCCATGAGGAGCTGAAGCCTCATATTGTACATAGAGACATCAAAGCCAAGAATATACTTCTTGATGGAAATTTGGCGCCTAAAATTTCAGACTTTGGTTTGGCAAAATTACTAAGAGATGAAACATCTTACATCAGTACTCAAGTTGCAGGGACATTGGGTTATCTGGCTCCAGAGTATGCCATATCTGGACAAGTGACACGAAAATCAGATGTTTATAGTTTTGGGGTATTACTTTTACAAATTGTCAGTGGCCTAGCAGTTGTAGATGCCTATCAAGATATTGAACGTTTCATAGTAGAGAAGGCGTGGGCAGCTTATGAAGCCAATGATCTATTAAGACTAGTTGATCCGGTGCTTAATATGAACTTTCCAACCGAAGAAGCCATAAAATTCCTCAAGGTGGGGCTACTTTGCGTGCAAGAAAGTGCTAAACTTAGGCCACGAATGTCAGATGTTGTAGAGAAGTTGACCAACAATGTTGATATGAAAGAAGTTCACATTTCAAAACCAGGGTTTGTTGCTGATCTCAGGAGCATCAGAATCAAACCACAAATGGTAATGAACTCGCCACAGGAATCAAGTTCTGCTGGAGCAACCTTTTCTAGCTCCATTTGGAGTTTAGCCAATCTTGCTCGTTAA 1227 0.4197 MFLLIFFTRSPSPSPKPSYIDSNQTRDPMKCCVFPRAMKISYFGCFSASTKEQNNNDYPEGENGGSFCVFTYNQLKSATSNFSDKVGEGGFGSVYKGRLKDGSFVAVKVLSVEVESMRGEREFVAELSTLANIKHQNLVSLKGCCVEGARRYLVYDYMENNTLHHAFLGSEERRIRFSWEARKDTSIGVARGLVFLHEELKPHIVHRDIKAKNILLDGNLAPKISDFGLAKLLRDETSYISTQVAGTLGYLAPEYAISGQVTRKSDVYSFGVLLLQIVSGLAVVDAYQDIERFIVEKAWAAYEANDLLRLVDPVLNMNFPTEEAIKFLKVGLLCVQESAKLRPRMSDVVEKLTNNVDMKEVHISKPGFVADLRSIRIKPQMVMNSPQESSSAGATFSSSIWSLANLAR* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01048 408 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Rops6g01048 408 Pfam Protein kinase domain 83 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01048 408 CDD STKc_IRAK 86 354 - -
Rops6g01048 408 SMART serkin_6 80 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01048 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Rops6g01048 408 FunFam serine/threonine-protein kinase PBS1-like 48 157 - -
Rops6g01048 408 SUPERFAMILY Protein kinase-like (PK-like) 60 352 IPR011009 -
Rops6g01048 408 FunFam Putative LRR receptor-like serine/threonine-protein kinase 158 364 - -
Rops6g01048 408 ProSiteProfiles Protein kinase domain profile. 80 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01048 408 Gene3D Transferase(Phosphotransferase) domain 1 158 366 - -
Rops6g01048 408 Gene3D Phosphorylase Kinase; domain 1 45 157 - -
Rops6g01048 408 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 67 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01048 Rops-Chr6 24781331 24783502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01048 70 397 Receptor kinase-like Gene Family AT1G53430 46.687 7.88e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g01048 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01048 - - gmx:100801728 598.586