Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01047 ATGCAGCAAACTCTCTTTAGCTTCTCACTCTTTCTTCTTCTTCTTCTTCTCTTCCACGGTGCATATGGGTTCGGTTCCATGGGACCCATCTCAGCTTCATTTGGAGAAAACGAGTTGTTCTGCGCCATCGATGCCAGTGGGAAGCAAGATGTGATTTGTTGGGGAAAGAACGCCACGTCAACACCGGCGGTTCTTCCGTCGCAATATTCGTCGTCTTACGTCAGCAACATCCCTGCCATGTCAGCACTTTCAGGCGGCGAAGGGTTCCTCTGCGGCATTTTAGCGAACACTTCACAAGCGTTTTGTTGGGGTGCCGTCGCCGCCACGAAACCGAGCGTAGATCTCGTTCTCGTGCCACCGGCGTACCGTAACATAGCCTACTCTCAAATCGCCGCTGGCATGAATCACGTCTGCGCCGTCAGGGGATCTTACTACGCCGATCGCGATTCCGGCAACGTGGATTGCTGGGAAATCTCGAAAACTTCAAATGACACCTTAGTTCCCAAGCTTAACGACTCGTTCTACGATCAATCGGTGATGAATCTTGAGCTGAACAAGGTTGTTTCCGGCGAAGGGTTCACCTGCGGCGTGCTAAATTCCGGTGGGTTGGTTTGTTGGGGACCCGATTCTGGGAGCTTAAATGTTTCCAACGTGTCGGAGACTTTCAGTGTTTTGGCGGCAGGGAGGAATGCCGTTTGCGGCGTTTCCAACTTTTCCGGCGATTTAAGGTGTTGGGGTGATCCGGATTCTTATTCGGATCCTCCACCCGTTAATGTTCGTTTGGTTTCTCTCTCTGCAGGGGCTCATCATTTTTGTGGTGTTAGAGAGGATAACCACGTGGTTGAATGTTGGGGTAGTTTGAAATCCTCTTTTGTTCCCAAAGGTTATGGCTTTATGGCTATTGCTTCTTCGGATTACACCACTTGTGGTATAAGAGAAGATGATCTTCTTCTTGATTGTTGGTTGGTGAATGCTTCAAAACCCGAATTTGATCCTCCTTTGGAACTTTCTAGTCCCGGTCTTTGTAAAGCTAGTTCGTGTGGTGTTGGGGAGTTTGATTTCAATGTGAGTGTTCTCAATGAGCCAGGTTTGACAAGTTTATGTGTTAGACAGGATTTGAGGATATGTTCACCGTGTGGGTCTAATTGTTCTCAAGGTTTCTTTTTGTCTAGTCCTTGTACTAGGAACTCGGATAGAGTTTGCACTGCTTGTTCTCTTTGCCAGAACAGTTCTTGTTGGGGTGTTTGTGGACTTCATTCTTCATCAGGGTCGCATTGGCATCATATCCGTAGATGGGTGGTCATAATTGGGTCTTCAGCTGTGGGTTTCTTACTGATTTTGACTTGTGGGTGTGTTTTTCCACGTTTGGTTGCCAAAAGAAAAGGGGGGCAGGGGACAAAGAAGCAGTCCAAGTCTTGCATTGGGAAACCGGAGCAGGAGGATGATGTGAATGCTGTTGGTCTTCACTCTTCTCCTTCTGTTAATTCCTGTCCTGGGATGCCTCAGGTTTTCAGACTTTCGGAGCTGAAAGATGCTACTAATGGGTTCAAGGAGTTTAATGAGCTTGGGAGGGGAAGTTATGGCTTTGTTTACAAAGCTACTTTGGCTGATGGGAGAGTGGTTGCTGTCAAGAGAGCAAATGCTGCCACAATAATACACACAAATAATCGTGACTTTGAAATGGAGCTGGAAATTCTATGCAAGATAAGGCACTGTAATATTGTTAACTTGTTGGGTTATTGCGCTGAGATGGGGGAGAGGTTGCTGGTTTATGAGTATATGCCTCATGGGACACTTTATGATCACCTTCATGGTGGCCTTTCACCTCTTAATTGGAGCCTCAGGCTGAAGATAGCAATGCAGGCTGCAAAGGGTCTTGAGTACCTTCACAAGGAACAACTGCCTCCAATTGTTCATAAGGATCTCAAGAGTTCAAACATTCTTTTGGATTCGGAGTGGGGGGCTAGAATTTCAGACTTTGGACTTCTTGCTTCAAGTGACAAAGATCTTAACGGGGACTTGGAAAGTGATGTTTACAACTTTGGGATTGTATTGCTAGAGATTCTAAGTGGAAGGAAGGCTTATGATAGAGATTTTACACCACCTAATGTGGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGGAAGGCAGCTGCTATAATTGATCGTTATGTGGCTCTTCCAAGAAATGTTGAACCTTTGCTTAAGCTTGCTGATATAGCAGAGCTTGCTGTCAGAGAGAATCCAAGTGAGCGTCCACCTATGTCAGATATAGCATCTTGGTTGGAGCAGATTGTGAAGGACGGATTGATCTTATAG 2319 0.4631 MQQTLFSFSLFLLLLLLFHGAYGFGSMGPISASFGENELFCAIDASGKQDVICWGKNATSTPAVLPSQYSSSYVSNIPAMSALSGGEGFLCGILANTSQAFCWGAVAATKPSVDLVLVPPAYRNIAYSQIAAGMNHVCAVRGSYYADRDSGNVDCWEISKTSNDTLVPKLNDSFYDQSVMNLELNKVVSGEGFTCGVLNSGGLVCWGPDSGSLNVSNVSETFSVLAAGRNAVCGVSNFSGDLRCWGDPDSYSDPPPVNVRLVSLSAGAHHFCGVREDNHVVECWGSLKSSFVPKGYGFMAIASSDYTTCGIREDDLLLDCWLVNASKPEFDPPLELSSPGLCKASSCGVGEFDFNVSVLNEPGLTSLCVRQDLRICSPCGSNCSQGFFLSSPCTRNSDRVCTACSLCQNSSCWGVCGLHSSSGSHWHHIRRWVVIIGSSAVGFLLILTCGCVFPRLVAKRKGGQGTKKQSKSCIGKPEQEDDVNAVGLHSSPSVNSCPGMPQVFRLSELKDATNGFKEFNELGRGSYGFVYKATLADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKIAMQAAKGLEYLHKEQLPPIVHKDLKSSNILLDSEWGARISDFGLLASSDKDLNGDLESDVYNFGIVLLEILSGRKAYDRDFTPPNVVEWAVPLIKQGKAAAIIDRYVALPRNVEPLLKLADIAELAVRENPSERPPMSDIASWLEQIVKDGLIL* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01047 772 Gene3D Transferase(Phosphotransferase) domain 1 594 670 - -
Rops6g01047 772 Gene3D Transferase(Phosphotransferase) domain 1 671 769 - -
Rops6g01047 772 SUPERFAMILY RCC1/BLIP-II 33 288 IPR009091 -
Rops6g01047 772 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 346 401 IPR001368 GO:0005515
Rops6g01047 772 Pfam Protein tyrosine and serine/threonine kinase 520 666 IPR001245 GO:0004672|GO:0006468
Rops6g01047 772 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Rops6g01047 772 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 7 766 - -
Rops6g01047 772 ProSiteProfiles Protein kinase domain profile. 516 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01047 772 Gene3D - 30 328 IPR009091 -
Rops6g01047 772 FunFam serine/threonine-protein kinase-like protein CCR1 486 593 - -
Rops6g01047 772 FunFam Serine/threonine-protein kinase-like protein CCR1 594 670 - -
Rops6g01047 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Rops6g01047 772 SUPERFAMILY Protein kinase-like (PK-like) 490 763 IPR011009 -
Rops6g01047 772 Gene3D Phosphorylase Kinase; domain 1 483 593 - -
Rops6g01047 772 SMART serkin_6 516 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01047 772 FunFam Serine/threonine-protein kinase-like protein CCR1 671 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01047 Rops-Chr6 24757277 24760116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01047 10 764 Receptor kinase-like Gene Family AT3G59420 31.719 8.01e-114 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Rops6g01047 PK_Tyr_Ser-Thr 2.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01047 - - gmx:100802259 1264.6