Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01043 ATGACGACTCGAATAGCACCAGGTGTGGGAGCAAATTTGCTGGGTCAACACGCAGCAGAGAGGAATCAAGATGCTACTGCTTACGTTGGCAATCTCGACCCTCAGATATCTGAGGAGTTATTGTGGGAGCTATTTGTTCAGGCAGGTCCCGTTGTTAATGTTTATGTTCCGAAGGATAGAGTGACTAACCAACATCAAGGTTATGGATTTGTTGAATTCCGAAGTGAGGAAGATGCTGACTATGCCATTAAGGTGCTTAACATGATTAAACTTTATGGAAAACCAATACGCGTAAATAAGGCTTCCCAAGATAAAAAGAGTTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTACGATACTTTCAGTGCATTTGGAGTTATTGTTACCAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGAGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGATACTAAGGGTGAAAGGCATGGTACTCCTGCAGAAAGAGTTTTGGCTGCAAGTAATCCAGGTGCACAGAAGAGCAGGCCTCATACTTTATTTGCCAGTGGGCCTCCAACACTTAACAATGTTGCTCAGGCTAATGGTACAATGGCTACTCCAGTGCCTCCTCGCCCCTTCGCCAACGGGGTTGCTCCAGCTTCTATTCCTGCCCTCCGTCCACCTCCTCCTCCTCAAGCTGCTGCCTTCCAGCCCATGCCGTTACCTGGACAACCAACATGGCATCAACAGCAGCCTGGTCAAACAATCCTACCACATGCTATGCCTCCTCCTCCAGTCCAGCAGTTCAGGCCCCCTCCCTCCGGTATGCAGATGCCACCACCTCCTCCACAAGGTGTTCCGGCTCCAAGGCCTCTTCCACCACCATCAGTAATGGCAAGCCAGCAGCCACCATCTGTTTGGCGACCGCCGCCACCGCCGCCACAACACCAACAGGGTGGACGTCCTATGGCATATCCTCAGTCCTCAATGCCGCCACCACCCCCACCACCTTCAAATTGA 1128 0.4858 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPGAQKSRPHTLFASGPPTLNNVAQANGTMATPVPPRPFANGVAPASIPALRPPPPPQAAAFQPMPLPGQPTWHQQQPGQTILPHAMPPPPVQQFRPPPSGMQMPPPPPQGVPAPRPLPPPSVMASQQPPSVWRPPPPPPQHQQGGRPMAYPQSSMPPPPPPPSN* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01043 375 CDD RRM1_SF3B4 28 100 IPR034158 -
Rops6g01043 375 CDD RRM2_SF3B4 111 193 IPR034159 -
Rops6g01043 375 Gene3D - 111 200 IPR012677 -
Rops6g01043 375 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 369 - -
Rops6g01043 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Rops6g01043 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Rops6g01043 375 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Rops6g01043 375 MobiDBLite consensus disorder prediction 251 274 - -
Rops6g01043 375 MobiDBLite consensus disorder prediction 251 375 - -
Rops6g01043 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Rops6g01043 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Rops6g01043 375 FunFam Splicing factor 3b subunit 4 16 108 - -
Rops6g01043 375 FunFam splicing factor 3B subunit 4 109 200 - -
Rops6g01043 375 SMART rrm1_1 26 99 IPR000504 GO:0003723
Rops6g01043 375 SMART rrm1_1 113 187 IPR000504 GO:0003723
Rops6g01043 375 MobiDBLite consensus disorder prediction 293 355 - -
Rops6g01043 375 Gene3D - 16 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01043 Rops-Chr6 24664982 24671552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01043 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 2.21e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01043 K12831 - gmx:100791039 570.852