Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01042 ATGATTACATTTATGGATTCAAAGGAGAAATCAGAAGAGGTGGATAGGTGTTTGGATCCTCAGTTATGGCATGCCTGTGCAGGTGGAATGGTGCAGATGCCAGCAGTGAACTCTAAGGTCTATTACTTCCCACAGGGTCATGCTGAACATGCATGTGGACCAGTTAACTTCAGGAATTTCCCCAAGGTTCCACCTTTGGTTCCATGTAGAGTGGCTTCTATCAAATACATGGCTGATCCTGAGACAGATGAGGTCTTTGCAAAACTCAGGCTTGTTCGTCTGAACAACAATGATACTGATTACGACCGTGATGTTGTTGGAGGCATGAATGTGTCTGAAAATCAGGACAAGCTTCTTTCATTTGCAAAGACCTTGACTCAATCAGATGCTAACAATGGTGGAGGGTTTTCTGTTCCTAGGTATTGCGCAGAGACAATTTTTCCTCGTTTGGACTATACAGCAGACCCTCCTGTTCAAAACATACTAGCTAAGGATGTTCATGGTGAAATATGGAAATTCAGGCATATTTATAGAGGCACGCCGAGGCGGCATCTATTGACTACTGGATGGAGTACTTTTGTCAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGAGGAGAAAATGGTGATCTATGTGTTGGAATTCGGAGGGCGAAAAAGGGTATTGGTGGTGGACCTGAATCAGGGTGGAATCCTGCAGGAGGAAATTGTCCTGTGCCTTATGGTGGATTGCCAGCAATTTTGAGAGGGGAGGATGATAACAGAATCATGAGAAATGGTAACAGCAATATTTTGAACCCAACTGCAAATATGATGGGGAAGGCAAAAGTGAGGCCAGAAGCAGTAATTGAAGCTGCAACTCTTGCTGCCAATAAGCAACCTTTTGAGGTTGTTTACTACCCAAGGGCTAGTACTCCAGAGTTTTGTGTGAAGGCCTCATTAGTTGAAGCAGCACTTCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACTGAGGATTCCTCGCGGATAAGTTGGTTTATGGGAATTATATCTTCAGTTCAAGTTGCTGATCCACTTGTCTGGCCTAACTCACCCTGGAGACTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGTCCATGGTTGGTTGAATTGGTAGCAAATATTCCTCCCATCAACCTTTCCCCTTACTCACCGCCTCCACGGAAGAAATTGAGATTGCCCCAACACCCAGATTTCCCCCTTGATGGCCAGATTCCAATGCCAACATTTCCCAGCAACCTTCTAGGTCCCAGCAACCCATATGGTTGTCTATCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTCCACCTCAATAAACTGCAGTCAGGTCTATTTCCGGCTGGTTTCCCGCCTCTTGATCACGCTGCTACACCAAAAAGTGTATCGAATAACCTTATATTGCAAAAGCCCAGCATGAGTGACAATCTCTCTTGCTTACTATCTATGGCAAGTTCTACTCAACCTTCAAAGAAAATGAATGATGAGAAGACACCCCAACTTGTGCTTTTTGGCCAAAAAATTCTCACTGAGCAACAAATCTCTCTGAGCAGCTCTGGTGATACGGTTTCCCCGGTTCTTACTGGAAATTGTTCATCAGATGGAAATGCTGATAAAGTGAATAATTTTTCTGATGGTTCTGGATCTGCTCTTCATCAGCAAGGCTTACACGAACACGCCTCTTGTGAGAGGTTCCCATGGTATAAGGATAACCGCCAAGAAACCGAGGTCAGTTTGGAGACCGGTCACTGTAAAGTTTTCATGGAATCGGAAGATGTAGGTCGGACAATTGACCTCTCATTGCTTGGATCTTATAATGAACTGCATAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATCTGAGGTACTAAGTCATGTGCTCTACCGCGATGTAACAGGAGCAGTGAAACACATTGGAGAGGAACCTTTCAGTAACTTCTCAAGAACAGCAAGGAGGTTGACTATTCTAATGGATTCCAGCAGTGACAATTTAGGAGTGTAG 2106 0.4435 MITFMDSKEKSEEVDRCLDPQLWHACAGGMVQMPAVNSKVYYFPQGHAEHACGPVNFRNFPKVPPLVPCRVASIKYMADPETDEVFAKLRLVRLNNNDTDYDRDVVGGMNVSENQDKLLSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQNILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRGENGDLCVGIRRAKKGIGGGPESGWNPAGGNCPVPYGGLPAILRGEDDNRIMRNGNSNILNPTANMMGKAKVRPEAVIEAATLAANKQPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGIISSVQVADPLVWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVANIPPINLSPYSPPPRKKLRLPQHPDFPLDGQIPMPTFPSNLLGPSNPYGCLSESTPAGMQGARHAHYGLSLSDLHLNKLQSGLFPAGFPPLDHAATPKSVSNNLILQKPSMSDNLSCLLSMASSTQPSKKMNDEKTPQLVLFGQKILTEQQISLSSSGDTVSPVLTGNCSSDGNADKVNNFSDGSGSALHQQGLHEHASCERFPWYKDNRQETEVSLETGHCKVFMESEDVGRTIDLSLLGSYNELHRKLADMFGIEKSEVLSHVLYRDVTGAVKHIGEEPFSNFSRTARRLTILMDSSSDNLGV* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01042 701 ProSiteProfiles PB1 domain profile. 615 698 IPR000270 GO:0005515
Rops6g01042 701 SMART B3_2 121 223 IPR003340 GO:0003677
Rops6g01042 701 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Rops6g01042 701 CDD B3_DNA 120 221 IPR003340 GO:0003677
Rops6g01042 701 Pfam Auxin response factor 289 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops6g01042 701 Gene3D - 612 699 - -
Rops6g01042 701 FunFam Auxin response factor 327 400 - -
Rops6g01042 701 Gene3D - 326 399 - -
Rops6g01042 701 Gene3D - 119 223 IPR015300 -
Rops6g01042 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops6g01042 701 SUPERFAMILY DNA-binding pseudobarrel domain 113 222 IPR015300 -
Rops6g01042 701 FunFam Auxin response factor 119 223 - -
Rops6g01042 701 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01042 Rops-Chr6 24651433 24655667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01042 1 701 B3 DNA Binding Superfamily AT4G30080 56.546 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops6g01042 B3 2.7e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01042 - - gmx:100796522 1183.32