Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01036 ATGAGACCAACAGAGAGAGAAGAGAGAAATGAGTGTGAGGAGGAGAGGAGGCGCCGTAGGAAGTGTGTAGAAGAAAGTGTGTTGGGTTGGGTGTGCCCTAGGTTAAAGGGTGAAACTAAAAAGCTGAACCAGAGAACAATGGTTTCTGACTCAAGATCTGTAAGATTTTGTGATGATCTTGAAACAGAGAAGTTAAGGGAAAGTCAAGAGAGTCACTTGTCAATGCTGGCATATAAGATGAGTGGCAAACAGAAGCTAGGGAAGGATGCAATAGACAAGTCATCACATGGAAGAGAACTTTCCAGGGTCTTTTCTGAGGATTATGATGCAACAGCGATGTTGATATTGGATCCTAGGGGATCTAGCGTAAACGGATGGAACAAAATTTTCTTAGCAGCTTGTTTGATTTCATTATTTGTGGATCCCCTATTCTTTTACTTACCAGTGGCTAAGAAAGACAAGTGCATTGATATGTCTATTGGTCTTGAAGTATCTTTTACCATAATTCGGTCTATGGTCGATGCATTTTATATTATTCAGATTTATGTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAACTTATTATAGACCCTTCAAAGATTGCATCAAAGTACCTGCAAAGAGACTTCTGGCTTGATCTTGTGGCTGCTCAACCACTTCCACAGGTACTGATTTGGGCTGTAATTCCAAATCTAAAGGGGTCAGAAATGATTGCTTCAAGGCAAATTTTGCGCCTTGTTACCATTTTTCAGTACCTCTTGAGGTTGTATCGTATTTATCCTCTATCATCTGAAATCATCAAGGCAAATGGGGTAATGATGGAAAAGACTTGGGCTGGGGCAGCATATAATCTGACCCTCTATATGCTGGCAAGTCATGTTTTAGGATCCTCTTGGTACCTATTATCGATTGAAAGGCAAGAGGAATGCTGGAAGAAAGCTTGTACACTTCAGTACCCACAGTGCCAGTATCATTATCTTGATTGTCAAAGTATAGGTGACCCAGATAGGACTGCTTGGTTCAGATCAAGCAATCTTTCAGATCTATGTGATCAGAACAGTGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTCACTTTGGAAATTACGGGCTCAAAGTTCTTAAACAAATACTATTACTGTCTATGGTGGGGACTGAGGAATCTAAGCTCTGTAGGACAGAATCTCTCAACAAGCACACATGTAGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCGTCCACAATGAGGCTAGAAGAATGGAGAATAAGAAGGACAGATACGGAAAGATGGATGCATCACAGGCAGCTCCCACGTTACCTGAAGCAAAATGTGAGACGTCATGACCAATTCAGATGGGTAGCAACTCGGGGAGTAGACGAGGAAGCTATTCTCAGAGACCTTCCTGTTGATCTCAGACGTGACATTAAACGCCATCTTTGCCTTAATCTAGTTCGACAAGTACCACTATTTGATCAGATGGATGAGAGGATGCTGGATGCAATATGTGAAAGGCTGAAGCCTTCTCTATGCACTCCAGGTACTTGCCTAGTTCGTGAAGGTGACCCTGTCAATGAGATGCTCTTCATTGTAAGAGGACGCTTAGATTCTTGTACCACCAATGGTGGCAGAACTGGTTTCTTTAACTCATCCAAACTTGGCTCTGGTGATTTCTGTGGTGAAGAGCTTTTGCCATGGGCCTTAGACCCTCGTCCAACCGTTGTTCTTCCTTCATCAACTCGCACAGTGAAAGCCATCACTGAAGTGGAAGCTTTTGCACTCATTGCTGAGGACTTGAAGTTTGTAGCAGCACAATTCCGCAGGTTACATTGCAAACAACTGAGGTACACTTTCAGGTTTCACTCACATCAATGGAGAACATGGGCTGCATGCTTTATACAAGCAGCTTGGTTCAGGTATAAAAGAACGAAAGAGACAAGAGAGCTCAAGAAAAAGGAAAGTAAGATGATGATGGCCTATGTGCATGGAATTGGCAATGAACATTTCTCTGCACCTCTACAGGCCCCAGAGGGCTCAAGTTTTTCAATGTATTCTGGAAAACTGGCAGCTAGCCCAAGGAAAGGTTGGAGCATGAGATATGTTCCTGAATTTGACATTCTTGGTTCATTAAGGAAGCCCCTTGAACCAAACTTTAATGATGATGATGATGGTTGA 2259 0.4232 MRPTEREERNECEEERRRRRKCVEESVLGWVCPRLKGETKKLNQRTMVSDSRSVRFCDDLETEKLRESQESHLSMLAYKMSGKQKLGKDAIDKSSHGRELSRVFSEDYDATAMLILDPRGSSVNGWNKIFLAACLISLFVDPLFFYLPVAKKDKCIDMSIGLEVSFTIIRSMVDAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDPSKIASKYLQRDFWLDLVAAQPLPQVLIWAVIPNLKGSEMIASRQILRLVTIFQYLLRLYRIYPLSSEIIKANGVMMEKTWAGAAYNLTLYMLASHVLGSSWYLLSIERQEECWKKACTLQYPQCQYHYLDCQSIGDPDRTAWFRSSNLSDLCDQNSDFFQFGIFADALTLEITGSKFLNKYYYCLWWGLRNLSSVGQNLSTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSSTMRLEEWRIRRTDTERWMHHRQLPRYLKQNVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLVREGDPVNEMLFIVRGRLDSCTTNGGRTGFFNSSKLGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHCKQLRYTFRFHSHQWRTWAACFIQAAWFRYKRTKETRELKKKESKMMMAYVHGIGNEHFSAPLQAPEGSSFSMYSGKLAASPRKGWSMRYVPEFDILGSLRKPLEPNFNDDDDG* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01036 752 FunFam Cyclic nucleotide-gated ion channel 1 516 634 - -
Rops6g01036 752 Gene3D Jelly Rolls 516 636 IPR014710 -
Rops6g01036 752 SUPERFAMILY Voltage-gated potassium channels 118 440 - -
Rops6g01036 752 ProSiteProfiles cAMP/cGMP binding motif profile. 518 603 IPR000595 -
Rops6g01036 752 SUPERFAMILY cAMP-binding domain-like 448 640 IPR018490 -
Rops6g01036 752 PRINTS EAG/ELK/ERG potassium channel family signature 181 190 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops6g01036 752 PRINTS EAG/ELK/ERG potassium channel family signature 387 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops6g01036 752 PRINTS EAG/ELK/ERG potassium channel family signature 481 488 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops6g01036 752 PRINTS EAG/ELK/ERG potassium channel family signature 413 424 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops6g01036 752 PRINTS EAG/ELK/ERG potassium channel family signature 431 440 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops6g01036 752 PRINTS EAG/ELK/ERG potassium channel family signature 298 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops6g01036 752 Pfam Ion transport protein 126 443 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops6g01036 752 CDD CAP_ED 518 637 IPR000595 -
Rops6g01036 752 Gene3D - 130 442 - -
Rops6g01036 752 Gene3D Helix hairpin bin 445 509 - -
Rops6g01036 752 SMART cnmp_10 518 649 IPR000595 -
Rops6g01036 752 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 98 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01036 Rops-Chr6 24541691 24553754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01036 97 681 Ion Channels AT2G28260 69.231 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01036 K05391 - gmx:100804375 1193.72