Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01035 ATGTCTACTACCTCTGCGGCTTCATTAGCACTTCCCACTCTCGGAACCAGACAACCTTTGTGTTCTCCACAATGTTTCTCTTCTTCTCTTTCCCTCAACCCTAACTTCAAACCCATTTCTATTTCCTCTGTTTTTCTTCCTCCAACGTTGTCACTGTCGTCTCGCTTCGTTTCACGTGTCGCACTCTCGGAGTTCGACCAGGAAGAGGAAACCTTCAGCGATGGAGGCAGACCCAACTACTCCCCTGACCTCAAACTCTTCGTTGGTAACCTGCCGTTCAGTGTTGACAGTGCTAGACTCGCTGAACTCTTCGAAAACGCAGGGAATGTGGAGATGGTTGAGGTGATTTATGATAAAACAACTGGGAAAAGCAGGGGTTTTGGTTTTGTGACCATGTCTTCAGCTGAGGAAGTTGAAGCGGCTGCTCAACAGTTTGATGGCTATGAACTGGATGGAAGGGCTTTGAGAGTAAATTCTGGACCACCTCCTGCTCGGAATGAGAATTCTCGTTGGAATGATAATGCTCGGAATGAGAATTCTCGTTGGAATGATAATGCTCGGAATGAGAATTCCCGTTGGAATGATAATTCTCGTGGGAATGATAATTCTCGTTCTCGTTGGAATGATAATTCTCGTGGGAATGATAATTCTCGGTTTGGAGGTCCTTCCAGAGGTGGTTCTTTTTCAGATAATGAGAACCGTGTTCATGTAGGTAATCTTGCTTGGGGTGTTGACAATTTGGCACTTGAGTCACTGTTTCGTGAACAAGGAAAGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGATTTGGATATGTGACTTACGGTAGCCCGGAAGAGGTTAACAATGCTATTCAGTCCTTAGATGGTGCGGACTTGAACGGCAGAGCTATACGAGTCTCGGTAGCAGAAGCTAGGGGCAGGCGTCAATTTTGA 954 0.4581 MSTTSAASLALPTLGTRQPLCSPQCFSSSLSLNPNFKPISISSVFLPPTLSLSSRFVSRVALSEFDQEEETFSDGGRPNYSPDLKLFVGNLPFSVDSARLAELFENAGNVEMVEVIYDKTTGKSRGFGFVTMSSAEEVEAAAQQFDGYELDGRALRVNSGPPPARNENSRWNDNARNENSRWNDNARNENSRWNDNSRGNDNSRSRWNDNSRGNDNSRFGGPSRGGSFSDNENRVHVGNLAWGVDNLALESLFREQGKVLEAKVIYDRESGRSRGFGYVTYGSPEEVNNAIQSLDGADLNGRAIRVSVAEARGRRQF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01035 317 SUPERFAMILY RNA-binding domain, RBD 80 179 IPR035979 GO:0003676
Rops6g01035 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Rops6g01035 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 305 IPR000504 GO:0003723
Rops6g01035 317 PANTHER OS02G0815200 PROTEIN 54 312 - -
Rops6g01035 317 Gene3D - 58 159 IPR012677 -
Rops6g01035 317 MobiDBLite consensus disorder prediction 162 179 - -
Rops6g01035 317 MobiDBLite consensus disorder prediction 153 231 - -
Rops6g01035 317 Gene3D - 162 316 IPR012677 -
Rops6g01035 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Rops6g01035 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Rops6g01035 317 SMART rrm1_1 234 307 IPR000504 GO:0003723
Rops6g01035 317 SMART rrm1_1 85 158 IPR000504 GO:0003723
Rops6g01035 317 Coils Coil 172 192 - -
Rops6g01035 317 SUPERFAMILY RNA-binding domain, RBD 229 315 IPR035979 GO:0003676
Rops6g01035 317 MobiDBLite consensus disorder prediction 186 231 - -
Rops6g01035 317 CDD RRM2_NsCP33_like 234 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01035 Rops-Chr6 24530821 24533449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01035 86 316 Eukaryotic Initiation Factors Gene Family AT3G16380 24.335 1.97e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01035 - - gmx:100786275 380.178