LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g01031	ATGGACTCAACCAATAGCCATGTTGAAGCCACCTTTTGCTTGAGCAATGGAAGTGGTGGTGATCCATTGAACTGGGGTGTGGCTGCTGAGTCACTCAAGGGGAGCCACTTGGATGAGGTGAAGCGCATGGTGGAGGAGTACCGGAAACCGGTGGTTCGACTGGGCGGTGAGACTTTAACCATCTCTCAGGTGGCTGCTATTTCCACACACGATCAAGGTGTTCGTGTGGAACTTTCTGAGTCTGCAAGGGCTGGCGTTAAGGCTAGTAGTGACTGGGTCATGAACAGCATGAACAATGGCACCGACAGTTATGGTGTCACCACCGGTTTCGGTGCTACCTCTCACCGTAGAACCAAACAGGGTGGTGCTTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGTACCTTACCACACACAGCAACTAGAGCAGCCATGCTAGTGAGAATCAACACTCTTCTTCAAGGGTACTCAGGAATTAGATTTGAGATTTTAGAAGCCATCACCAAGCTCCTAAACAACAACATTACCCCATGCTTGCCACTTAGGGGTACAATTACAGCATCTGGTGATCTTGTTCCTCTTTCTTACATTGCTGGTTTGCTAACTGGAAGACCCAACTCCAAGGCTGTGGGACCCTCAGGAGAGATTCTCAATGCCCAGGAAGCTTTTCAATTGGCAAACATTGGTTCTGAGTTCTTCGAATTGCAACCAAAAGAAGGACTTGCTCTTGTTAATGGCACTGCTGTTGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGAGGCAAATATATTAGCTGTTTTGTCTGAAGTTCTTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGACTCATAAGTTAAAGCACCACCCTGGACAAATTGAGGCTGCTGCTATTATGGAACATATTTTGGATGGAAGCTCATATATGAAAGCAGCTAAGAAGTTGCATGAGGTAGATCCTTTGCAAAAGCCTAAACAAGATCGCTATGCACTCAGAACTTCACCCCAATGGCTTGGTCCTTTGATTGAAGTGATCAGATTTTCAACCAAGTCAATTGAGAGGGAGATAAACTCGGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAACTTTCAGGGAACCCCAATTGGAGTTTCAATGGATAATACAAGGTTGGCTCTTGCTTCAATAGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCCAGTAGAAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAATATCTTGCAAACCCAGTGACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCATCTAGAAAAACAAATGAGGCTATTGAGATCCTTAAGCTCATGTCTTCCACTTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTCAAGAACACTGTAAGCCAAATTGCAAAGAGGACACTCACCACAGGTGTCAATGGAGAACTCCATCCTTCTAGATTTTGTGAGAAAGATTTGCTCAAAGTTGTTGATAGGGAGTATGTATTTGCCTACGTTGATGACGCCTGCAGTGCTACATACCCATTGATGCAAAAACTAAGGCAAGTGCTTGTGGATCATGCATTGGCAAATGCAGATGGTGAGAAGAACTTGAACACATCTATTTTCCAAAAGATTACAACATTTGAGGAGGAGTTGAAGACCCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGTTGCATATGAGAATGGCCAATGTGCAATTCCAAACAAGATTGAGGAATGTAGGTCTTACCCATTGTACAAGTTCGTGAGGGAAGAGTTAGGGACAGGGTTGCTAACCGGAGAAAAGGTCATATCACCAGGTGAGGAATGTGATAAACTGTTCACAGCAATGTGCCAAGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAATGGTGCTCCTCTTCCAATTTGTTAG	2139	0.439	MDSTNSHVEATFCLSNGSGGDPLNWGVAAESLKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAISTHDQGVRVELSESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAQEAFQLANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQIAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYVDDACSATYPLMQKLRQVLVDHALANADGEKNLNTSIFQKITTFEEELKTLLPKEVESARVAYENGQCAIPNKIEECRSYPLYKFVREELGTGLLTGEKVISPGEECDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC*	713

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g01031	712	FunFam	Phenylalanine ammonia-lyase	259	567	-	-
	Rops6g01031	712	NCBIfam	phenylalanine ammonia-lyase	21	701	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
	Rops6g01031	712	SUPERFAMILY	L-aspartase-like	21	712	IPR008948	GO:0003824
	Rops6g01031	712	Gene3D	Fumarase/aspartase (Central domain)	259	707	-	-
	Rops6g01031	712	PANTHER	HISTIDINE AMMONIA-LYASE	16	712	IPR001106	-
	Rops6g01031	712	Gene3D	-	14	258	IPR024083	-
	Rops6g01031	712	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	194	210	IPR022313	GO:0016841
	Rops6g01031	712	CDD	PAL-HAL	57	522	IPR001106	-
	Rops6g01031	712	FunFam	Phenylalanine ammonia-lyase	14	258	-	-
	Rops6g01031	712	Gene3D	-	525	646	IPR023144	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g01031	Rops-Chr6	24431863	24435581	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g01031	21	712	Monolignol Biosynthesis Gene Families	AT2G37040	84.393	0.0	1240

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g01031	K10775		-	gmx:100811101	1310.82

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