Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01031 ATGGACTCAACCAATAGCCATGTTGAAGCCACCTTTTGCTTGAGCAATGGAAGTGGTGGTGATCCATTGAACTGGGGTGTGGCTGCTGAGTCACTCAAGGGGAGCCACTTGGATGAGGTGAAGCGCATGGTGGAGGAGTACCGGAAACCGGTGGTTCGACTGGGCGGTGAGACTTTAACCATCTCTCAGGTGGCTGCTATTTCCACACACGATCAAGGTGTTCGTGTGGAACTTTCTGAGTCTGCAAGGGCTGGCGTTAAGGCTAGTAGTGACTGGGTCATGAACAGCATGAACAATGGCACCGACAGTTATGGTGTCACCACCGGTTTCGGTGCTACCTCTCACCGTAGAACCAAACAGGGTGGTGCTTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGTACCTTACCACACACAGCAACTAGAGCAGCCATGCTAGTGAGAATCAACACTCTTCTTCAAGGGTACTCAGGAATTAGATTTGAGATTTTAGAAGCCATCACCAAGCTCCTAAACAACAACATTACCCCATGCTTGCCACTTAGGGGTACAATTACAGCATCTGGTGATCTTGTTCCTCTTTCTTACATTGCTGGTTTGCTAACTGGAAGACCCAACTCCAAGGCTGTGGGACCCTCAGGAGAGATTCTCAATGCCCAGGAAGCTTTTCAATTGGCAAACATTGGTTCTGAGTTCTTCGAATTGCAACCAAAAGAAGGACTTGCTCTTGTTAATGGCACTGCTGTTGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGAGGCAAATATATTAGCTGTTTTGTCTGAAGTTCTTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGACTCATAAGTTAAAGCACCACCCTGGACAAATTGAGGCTGCTGCTATTATGGAACATATTTTGGATGGAAGCTCATATATGAAAGCAGCTAAGAAGTTGCATGAGGTAGATCCTTTGCAAAAGCCTAAACAAGATCGCTATGCACTCAGAACTTCACCCCAATGGCTTGGTCCTTTGATTGAAGTGATCAGATTTTCAACCAAGTCAATTGAGAGGGAGATAAACTCGGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAACTTTCAGGGAACCCCAATTGGAGTTTCAATGGATAATACAAGGTTGGCTCTTGCTTCAATAGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCCAGTAGAAATCCAAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAATATCTTGCAAACCCAGTGACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCATCTAGAAAAACAAATGAGGCTATTGAGATCCTTAAGCTCATGTCTTCCACTTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTCAAGAACACTGTAAGCCAAATTGCAAAGAGGACACTCACCACAGGTGTCAATGGAGAACTCCATCCTTCTAGATTTTGTGAGAAAGATTTGCTCAAAGTTGTTGATAGGGAGTATGTATTTGCCTACGTTGATGACGCCTGCAGTGCTACATACCCATTGATGCAAAAACTAAGGCAAGTGCTTGTGGATCATGCATTGGCAAATGCAGATGGTGAGAAGAACTTGAACACATCTATTTTCCAAAAGATTACAACATTTGAGGAGGAGTTGAAGACCCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGTTGCATATGAGAATGGCCAATGTGCAATTCCAAACAAGATTGAGGAATGTAGGTCTTACCCATTGTACAAGTTCGTGAGGGAAGAGTTAGGGACAGGGTTGCTAACCGGAGAAAAGGTCATATCACCAGGTGAGGAATGTGATAAACTGTTCACAGCAATGTGCCAAGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAATGGTGCTCCTCTTCCAATTTGTTAG 2139 0.439 MDSTNSHVEATFCLSNGSGGDPLNWGVAAESLKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAISTHDQGVRVELSESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAQEAFQLANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQIAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYVDDACSATYPLMQKLRQVLVDHALANADGEKNLNTSIFQKITTFEEELKTLLPKEVESARVAYENGQCAIPNKIEECRSYPLYKFVREELGTGLLTGEKVISPGEECDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01031 712 FunFam Phenylalanine ammonia-lyase 259 567 - -
Rops6g01031 712 NCBIfam phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Rops6g01031 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Rops6g01031 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Rops6g01031 712 PANTHER HISTIDINE AMMONIA-LYASE 16 712 IPR001106 -
Rops6g01031 712 Gene3D - 14 258 IPR024083 -
Rops6g01031 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
Rops6g01031 712 CDD PAL-HAL 57 522 IPR001106 -
Rops6g01031 712 FunFam Phenylalanine ammonia-lyase 14 258 - -
Rops6g01031 712 Gene3D - 525 646 IPR023144 -
Rops6g01031 712 Pfam Aromatic amino acid lyase 59 534 IPR001106 -
Rops6g01031 712 FunFam Phenylalanine ammonia-lyase 525 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01031 Rops-Chr6 24431863 24435581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01031 21 712 Monolignol Biosynthesis Gene Families AT2G37040 84.393 0.0 1240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01031 K10775 - gmx:100811101 1310.82