Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01025 ATGGATCGGGAAGAATATTTGCGGAAGTGTTCCAATATCACATGCCAAAGGGTGGATGAATTTGTACCTTCTCTTCAAGATGAAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAATGATCATGTTTCAGTGGATGGTATATTGTATTTTAATGAGGAGAATATAGGGAAATGCAATGATGCAGAAAATCTTTCCTGTGGATTTGAATTTGGTTTAAAATCAAGTATCGGTGGTTTGGATTCTCATACAACTTTGAATGGCAACGATGATTTGGAACTGGAGGTCCTTGACGGATTGCTGGATGATGTTGAAATTGATGATCTTGAAGGAACTGATGGTTTCTCTGGTACATGTGGAGAGTATTTTTTGGATTTTGAATTTGACAACAAAGCTGAGGTACCAGGCTCTGGCCCTTATGAAGGTTCACTTTTGCAAAACTCAAGTTCAGAAAGCCATTCTTCAGGATTAAGTGGAAGTAGCATCATTGGTGGGGAATCAACAAAAGTACCCATTGCACACTCTGAATGCAAAAATGATTCTCTAGATGAGACAGTAACCTATGAATCTCATGGTGCCTTCAGGAACAGTCCAAGTCAACCATCAAATGTGGATTGCATGTACAACATTTCACTTGATATAAAGCATCTGCATGAGTTGAATAACAATCAAAGTTTTGCTGGTGGTATATTGTCTCATGAGAGGAAAAACGTTTCTGTTGAAAAATGCCAACCTGCTGCACCTAGAGAGAAGAGATTCCGAAAGCCCACTCAGAGGTATATTGAAGAATTTTCAAATTTGAGGTCAAAGGAAAAAGTACCAACTACTGGTACAAAAAATAAACATTTGAGTGTGTCATCATGTAATGAACTTCATATGAAAATTAAAGCATTGAGAAAGATTCCAGGCAAGAAGTCTGGTAATGGAAGTAGTGGTTTGATGCTTTCTGAGTTGCAAGTTTGCAAGGGGTGTCCAAAGAAAGAGAAACTTGAATATGACAATGAGCCTTTTCCCTCGGAGTCTGAGGATGAATGTTTGACACCAAAATGTTCTAGAAGGAAAGATCGAAGAAAGCATCAGAGGATGTGGACTCTCACTGAAGTGATGAAGTTGGTTGATGGCATATCTGAATACGGAGTTGGTCGATGGACTGATATAAAGAGGTTTTTGTTTTCTTCGTCAAGCTACCGAACTCCCATAGATCTCAGGGACAAGTGGCGTAACCTTTTAAGAGCCAGTTCTGCACAGAAATTCAACAAGAAAGAGGATGAAAAAAATGACGAGCTTGCCCTACGCCCCTTACCATTTAATGTGGTGCGTCGTGTGCGTGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGCTCAAAGAAATTGTGCGTTAGCCAAGTTGGTTCTTCAGTCATTGCTAGTGAAAATAGAGGTTCTCCTCCCATTAGTCTTAGCAGAAGAAATGTACGTAGAAAGAAGTGTACTTAG 1485 0.3973 MDREEYLRKCSNITCQRVDEFVPSLQDEVMEVEHLLAEPRNDHVSVDGILYFNEENIGKCNDAENLSCGFEFGLKSSIGGLDSHTTLNGNDDLELEVLDGLLDDVEIDDLEGTDGFSGTCGEYFLDFEFDNKAEVPGSGPYEGSLLQNSSSESHSSGLSGSSIIGGESTKVPIAHSECKNDSLDETVTYESHGAFRNSPSQPSNVDCMYNISLDIKHLHELNNNQSFAGGILSHERKNVSVEKCQPAAPREKRFRKPTQRYIEEFSNLRSKEKVPTTGTKNKHLSVSSCNELHMKIKALRKIPGKKSGNGSSGLMLSELQVCKGCPKKEKLEYDNEPFPSESEDECLTPKCSRRKDRRKHQRMWTLTEVMKLVDGISEYGVGRWTDIKRFLFSSSSYRTPIDLRDKWRNLLRASSAQKFNKKEDEKNDELALRPLPFNVVRRVRELAKIHPYPRQRGSKKLCVSQVGSSVIASENRGSPPISLSRRNVRRKKCT* 495
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01025 494 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 356 415 IPR017930 -
Rops6g01025 494 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 12 468 - -
Rops6g01025 494 Pfam Myb-like DNA-binding domain 364 411 IPR001005 -
Rops6g01025 494 SUPERFAMILY Homeodomain-like 358 427 IPR009057 -
Rops6g01025 494 SMART sant 360 413 IPR001005 -
Rops6g01025 494 MobiDBLite consensus disorder prediction 472 494 - -
Rops6g01025 494 MobiDBLite consensus disorder prediction 138 166 - -
Rops6g01025 494 Gene3D - 350 462 - -
Rops6g01025 494 ProSiteProfiles Myb-like domain profile. 356 411 IPR001005 -
Rops6g01025 494 MobiDBLite consensus disorder prediction 142 166 - -
Rops6g01025 494 CDD SANT_TRF 362 412 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops6g01025 Rops-Chr6 24326469 24332459 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01025 364 417 Single Myb Histone (SMH) Gene Family AT1G17520 42.857 9.33e-06 45.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01025 - - aprc:113871152 668.307