Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01024 ATGAGGAACCTCCCTCTCGTTTTCTCTGTCCTTTCATTAACTCTGCTACCAACTATTCAATCCGCCGATAACACTTTCGCACCCTCCTTTTATTCCGAAGAAATCTACAAGGAACTTGAAAATCTCGCTACAATTTTAAGCAAGGACATTAAATCAAATTTAGGCTTCTGCATTAAGGATGTGAAAAAAGATTGGTCGGAAGCATTTGATTTTCAGGGAAAATTGGATTTCGTGGATTCTTGTGTTAAGAAAAAAGGAGATTTCAGAGATCGAATATGTTCTTCAGCTGAAATAAGGCACTACTTCCATGGTTTCTTGGAGCAGGGAGCATCATCTGCCAATTATGTAAAACCTAACAGGAATTGCAATTTGACCTCATGGGTTTCGGGTTGTGAACCTGGTTGGAGCTGTAGTGCGGGCAAGAGTATTGACCTCAAAAAGGACATGAAGGACATTCCTTATAGAACCAAAAATTGCCAACCTTGTTGCGAGGGGTTTTTCTGCCCTCAAGGATTAACTTGCATGATACCTTGCCCACTAGGTTCTTATTGTCCACTGGCAAAACTGAACAATGAGACTGGACTATGTGACCCATATAGTTACCAGATACCTCAGGGAGAAACAGATCATACTTGTGGTGGTGCTGATATTTGGTCTGGGGTGGTGAATAATAGTGATATCTTCTGTTCTCCAGGATCATACTGCCCAACTACAACACGAAAAGTTTCTTGTGATAGTGGATATTACTGCAGGAAGGGTTCTACTCGCCAACATCCATGCTCCAAGTTGAGTACCTGTAATCCAAAGACGTCAAACCAAAATATGCATGCTTATGGTGCTTTGCTTTTAGTTGCATTGACTACCCTCCTGATCTTCATTTATAACTGGTCTGATCAAGTTCTAGCTACACGAGAAAGAAGGAAGGCTAAATCCAGGGAAGCAGCAGCAAGACAAGTGAGAGAAACTGTACAAGCTCGAGAAAGGTGGAAAGTAGCAAAAGATGCTGCCAAGAGGGGTGGGTCAGGATTGCAAGAGCAGTTCTCCCGCACCTTTTCTCGCAGAAAATCAGTAAGGCAAGCAGAGCAATCAAAAGGTTTTACTCAAGCTAAACCTGCTTCAGACAATACACTTTTGCCGCCAATGCCTCCAGAATCCTCAGGCACATCTGAGCAGTCATCTGCAGCTACAAAAGCCCAAAAAACGGGACCAAGCAACCTGACTAAAATGTTGAATTCCCTGGAAAATGACCCTCATAGCAATGAAGGATTCAACCTGCAGATTGGAGACAAAAATATTAAAAAGCAGATGCCAAAGGGAAAACAGTTGCATACGCAAAGCCAAATTTTAAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAAGAACTTGACTTTCTCAGGAGTGATTTCAATGGCTACTGAAGGTGAGGTTAGAACAAGGCCTGTGATTGAGGTAGCTTTCAAAGATTTAACTCTCACTTTGAAAGGGAAAAGAAAACATCTACTGAGGTGCGTTACGGGTAAAATCATGCCTGGTCGAGTTTCAGCCGTGATGGGTCCCTCAGGAGCAGGCAAAACTACATTTCTTTCAGCTTTAGCTGGGAAAACAAGAGGATGCACTATGACAGGCTCAATTTTAATTAATGGAAAACCTGAATCCATTCACTGTTATCAGAAAATCATTGGTTTTGTGCCACAGGACGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTGTCAGAGGACATGCCAAAACCAGATAAGGTTTTGATTGTTGAAAGAGTAATTGAGTCCTTGGGGCTCCAGGCAGTGAGGGACTCCCTTGTTGGGACAGTTGAGAGGCGAGGTATATCTGGAGGGCAACGAAAACGTGTAAATGTAGGGATGGAGATGGTCATGGAGCCTTCGTTATTAATCTTAGATGAGCCTACAACTGGTCTGGACAGTGCATCTTCCACTTTACTGCTTAAAGCACTTCGTCGTGAAGCTCTTGAAGGGGTAAACATCTGCATGGTACTTCACCAACCAAGCTATACATTGTTCAGAATGTTTGATGATATAATATTTCTAGCCAAAGGTGGCCTTACTGCATATCACGGTCCTGTTAAAAAAGTGGAAGAATACTTTGCTAGCATTGGAATCACTGTACCTGATCGTGTGAATCCTCCAGACCATTTCATTGACATTCTGGAAGGTTTAGTGAAACCAAGTTCAGGTGTGACGCATCAACAACTTCCTGTCAGATGGATGCTTCATAATAGTTACCCAGTACCACCAGATATGCTTCATTTTGCTGATCAAATTGCTGCATCATCTTCCTCAAATACAAATGACACAATAAAGGGTACTGATGAAGCTGCTGATCAATCCTTTGCTGGAGAGTTTTGGGAGGATATGAAGAGTAATGTTCAGATCCAACGAGATCATATAGAGGCAACCTTCTTAAAGACTAAGGACTTATCTAACCGAGTAACTCCTGGTGTCGCCCGACAATATAGATACTACCTTGGACGGATTTGTAAGCAGCAGCTGCGAGAAGGAAAATCACAAGCAGTTGACTATCTCCTTTTATTAGTTGCTGGTGCTATCTTAGGAACTCTAACGAAAGTAAATGATGAAACATTTGGGTCTCTTGGATATACATATACTGTCATTGCTGTCTCTCTACTTTGCAAGATATCAGCTCTCAGATCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGGATCAGCACTCTGGCTCATTTTATGTCCAAAGATACATTTGATCTTTTCAATACAATCATCAAACCTGTCGTTTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGCTTCGGAAGTAATTATGTGGTTTTGCTCTGCCTTGTGTACTGTGTGACTGGCATGGCTTATGCATTAGCAATTTATTTTGAACCTGCTCCCGCTCAGCTGTGGTCAGTGCTTCTCCCTGTTGTGATGACTCTCATTGCGAACCAGACAAGAGATACTGCCCTGATGAAGATCCTAGTAAAATTGTGCTACCCAAATTGGGCTTTGGAGGCCTTTATCATTGCAAATGCTGAAAGGTACACTGGGGTGTGGCTGATAACTCGTTGTAGTTCACTGATGAATAGTGGTTATGATGTCAACGATTGGCCTATTTGTCTGATTGCCCTCATTTTCTATGGTATGGTTGCCCGAGTTGTGGCCTTCTTTTGTCTGGTGGTCACCCAAAAGAAGTGA 3288 0.4221 MRNLPLVFSVLSLTLLPTIQSADNTFAPSFYSEEIYKELENLATILSKDIKSNLGFCIKDVKKDWSEAFDFQGKLDFVDSCVKKKGDFRDRICSSAEIRHYFHGFLEQGASSANYVKPNRNCNLTSWVSGCEPGWSCSAGKSIDLKKDMKDIPYRTKNCQPCCEGFFCPQGLTCMIPCPLGSYCPLAKLNNETGLCDPYSYQIPQGETDHTCGGADIWSGVVNNSDIFCSPGSYCPTTTRKVSCDSGYYCRKGSTRQHPCSKLSTCNPKTSNQNMHAYGALLLVALTTLLIFIYNWSDQVLATRERRKAKSREAAARQVRETVQARERWKVAKDAAKRGGSGLQEQFSRTFSRRKSVRQAEQSKGFTQAKPASDNTLLPPMPPESSGTSEQSSAATKAQKTGPSNLTKMLNSLENDPHSNEGFNLQIGDKNIKKQMPKGKQLHTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATEGEVRTRPVIEVAFKDLTLTLKGKRKHLLRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKTRGCTMTGSILINGKPESIHCYQKIIGFVPQDDIVHGNLTVEENLRFSARCRLSEDMPKPDKVLIVERVIESLGLQAVRDSLVGTVERRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFASIGITVPDRVNPPDHFIDILEGLVKPSSGVTHQQLPVRWMLHNSYPVPPDMLHFADQIAASSSSNTNDTIKGTDEAADQSFAGEFWEDMKSNVQIQRDHIEATFLKTKDLSNRVTPGVARQYRYYLGRICKQQLREGKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKISALRSFSLDKLQYWRESASGISTLAHFMSKDTFDLFNTIIKPVVYLSMFYFFSNPRSSFGSNYVVLLCLVYCVTGMAYALAIYFEPAPAQLWSVLLPVVMTLIANQTRDTALMKILVKLCYPNWALEAFIIANAERYTGVWLITRCSSLMNSGYDVNDWPICLIALIFYGMVARVVAFFCLVVTQKK* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01024 1095 SMART AAA_5 517 709 IPR003593 GO:0016887
Rops6g01024 1095 MobiDBLite consensus disorder prediction 323 423 - -
Rops6g01024 1095 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 232 1082 - -
Rops6g01024 1095 MobiDBLite consensus disorder prediction 361 423 - -
Rops6g01024 1095 Pfam ABC transporter 511 659 IPR003439 GO:0005524
Rops6g01024 1095 CDD ABCG_EPDR 489 715 - -
Rops6g01024 1095 ProSitePatterns ABC transporters family signature. 632 646 IPR017871 GO:0005524|GO:0016887
Rops6g01024 1095 Gene3D - 481 729 IPR027417 -
Rops6g01024 1095 FunFam ABC transporter G family member 24 485 727 - -
Rops6g01024 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 714 IPR027417 -
Rops6g01024 1095 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 491 732 IPR003439 GO:0005524
Rops6g01024 1095 Pfam ABC-2 type transporter 689 1095 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01024 Rops-Chr6 24298242 24319606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01024 518 711 Calmodulin-binding Proteins AT2G36910 28.218 1.48e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01024 - - gmx:100780238 1943.7