Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01023 ATGAAGTGTTTTCCATTCTACTATGGAGAGAAGAAGGATGATCCTTACAGTTCTACTTATATTGAGGGTGAGGTGAAAAGAACTGGTTCTGAATTGAATTCTCAGGATGCCTCAGACAATAGCACAGACTCACTCAGGAGGAATGCATTTCCCAGTTTGTCCCAAAGACCCAGCAACCTGAGAGTATTTACTGTATCTGAACTGAAATCAGCCACAAAGAATTTTAGTCGCTCTGTTATGCTTGGAGAGGGTGGGTTCGGGTGTGTCTACAAGGGATTTATCAAGAGTGTAGATGATCCTTCCCAAAAAATTGAAGTTGCTGTTAAACAACTTGGTAGAAGAGGAATTCAGGGGCATAAGGAATGGGTAACAGAAGTGAATGTTCTTGGAATTGTTGAGCATCCCAATCTTGTGAAACTAGAGGGCTACTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATATATGCCCAATGGAAGTGTGGAACATCACTTATCCCCACGATCAGAAACTCCTCTTCCATGGAGTAGGAGATTGAAAATAGCCCAAGATGCAGCTCGTGGCTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGATGAGCAGTGGAATGCAAAGCTTTCAGACTTTGGATTAGCAAGATTGGGACCATCTGATGGGTTAACTCATGTCTCCACAGCGGTTGTAGGAACAATGGGGTATGCAGCTCCTGAATATATTCAAACTGGGCGTCTCACATCAAAGATTGATGTATGGAGTTATGGTGTCTTCCTTTATGAACTCATCACTGGCAGGCGCCCTTTAGATCGAAACCGCCCAAAGGGTGAGCAGAAGTTGTTGGAATGGATAAGACCATACCTTTCAGATGGGAAGAAATTTCAAATAATATTGGATCCAAGACTTGAGAGAAAGAAACAACTCTTGAAGTCAGCCCTGAGACTTGCTATGGTAGCTAACCAATGCTTAGTCAGAAACCCAAAGAATCGCCCAAAAATGAGTCAAGTATTAGAAATGGTGAATCGGATTGTGGAGTCTTCAGTGAATGCTAATCAACAGTCACCCTTGAAGAGTGTAGCCTCGGCAGAAGCTTCTCAGGACACTGAAATAAAGCACAAGAAAAGGATCATGGATCAAAAACATGGAGATTGTAATTGGTTTAGGATGTGGAGACCAAAGCTTTTAAGAGCATGTTGA 1248 0.4183 MKCFPFYYGEKKDDPYSSTYIEGEVKRTGSELNSQDASDNSTDSLRRNAFPSLSQRPSNLRVFTVSELKSATKNFSRSVMLGEGGFGCVYKGFIKSVDDPSQKIEVAVKQLGRRGIQGHKEWVTEVNVLGIVEHPNLVKLEGYCADDDERGIQRLLIYEYMPNGSVEHHLSPRSETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKIDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIRPYLSDGKKFQIILDPRLERKKQLLKSALRLAMVANQCLVRNPKNRPKMSQVLEMVNRIVESSVNANQQSPLKSVASAEASQDTEIKHKKRIMDQKHGDCNWFRMWRPKLLRAC* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01023 415 MobiDBLite consensus disorder prediction 28 51 - -
Rops6g01023 415 Gene3D Phosphorylase Kinase; domain 1 48 160 - -
Rops6g01023 415 SUPERFAMILY Protein kinase-like (PK-like) 51 357 IPR011009 -
Rops6g01023 415 FunFam Serine/threonine-protein kinase PCRK2 161 371 - -
Rops6g01023 415 MobiDBLite consensus disorder prediction 27 51 - -
Rops6g01023 415 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Rops6g01023 415 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Rops6g01023 415 CDD STKc_IRAK 81 360 - -
Rops6g01023 415 PANTHER OS01G0588500 PROTEIN-RELATED 38 360 - -
Rops6g01023 415 ProSiteProfiles Protein kinase domain profile. 75 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01023 415 Gene3D Transferase(Phosphotransferase) domain 1 161 385 - -
Rops6g01023 415 Pfam Protein tyrosine and serine/threonine kinase 80 355 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01023 Rops-Chr6 24289111 24289575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01023 1 354 Glycoside Hydrolase AT3G07070 45.604 5.79e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops6g01023 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01023 - - gmx:100305438 718.383