Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01020 ATGACTTCAGAGGTAGTTATCCACACGTTCTCTCAAACAGACACTAAACCCTCCACCACCACCGTCACTCCCTCCGACCCCAATGTGCAACTCACTGTCGCAAAAAGACCCTCCAACACCGCCACCCGCTCCACCAAGGACCGTCACACCAAGGTCAACGGCCGTGGCCGCCGTGTCCGCATGCCGCCGCTCTGTGCCGCCAGAATATTCCAGCTCACCCGAGAGCTCGGCCACCGCTCCGACGGTGAGACCATCGAGTGGCTCCTCCGACAGGCGGAACCTTCCATCATCGCTGCCACCGGCACTGGCACTGTCCCCTCCGATCCTGTTTCATCCGTATCCGCCGCCGTCTCCTCCTCCTTGCCCTCCGTCCCTTGCCGTGTCCAGCCAATCTCGTCGGACGCCGGGGGGCATGGCTTATTCGCCGTGGCTATGCCGCAGCCGAGTTGCCGGCTCGACCTCTGCCAGCCGCCGCCTGGAATGGAGTATTCGCATGCGGCGGCGAATGGGTACCGTCATATGCCATTCACCGCGTTGCTGTTGCAGCCGACGACGGCGGAGGAGAATCAGCAAGAGGAGACTCTCGGTGAACAATGA 597 0.6214 MTSEVVIHTFSQTDTKPSTTTVTPSDPNVQLTVAKRPSNTATRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPSDPVSSVSAAVSSSLPSVPCRVQPISSDAGGHGLFAVAMPQPSCRLDLCQPPPGMEYSHAAANGYRHMPFTALLLQPTTAEENQQEETLGEQ* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01020 198 ProSiteProfiles TCP domain profile. 45 99 IPR017887 -
Rops6g01020 198 MobiDBLite consensus disorder prediction 1 55 - -
Rops6g01020 198 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 127 IPR005333 GO:0003700
Rops6g01020 198 MobiDBLite consensus disorder prediction 1 40 - -
Rops6g01020 198 Pfam TCP family transcription factor 44 120 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01020 Rops-Chr6 24265770 24266366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01020 45 185 TCP Transcription Factor Family AT2G37000 57.042 1.23e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops6g01020 TCP 4.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01020 - - cam:101510590 271.166