Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01001 ATGGCGAAATGCTTCGACCTCAAAACGATTACGTATTACTCACACAGGCCACCCATTCACCTTCCCACTGACCCTAACCTCTCACTCACTTCATTCCTTTTCCAAAGCACTACCTCCTCCGTCTCCACGCTCGCCCTCGCAGATGTCGATTCCGGCCACTCCCTCACCTTTCGCAACCTCAAAACTCACGTCTCCGCTCTTTCTCGCTCCTTGCTCCGCCTTGGAATCCGGAAAAGCGACGTCGTTTTGCTATTCGCACCAAACTCCATACGCTTCCCCATTTGCTTCCTCGCCGTCGTTGCCATCGCCACCACCTGCAGCCCCTTGTACACCATCTCCGAACTCTCCACGCAAGTTTACGACTCCAAACCCAAGCTCGTCATCACCGTAACGGAACTCTTTCACAAAATCGAAGCCTTAGCCTTGGATTTACCTTACATAATGCTCGATGATCCTTCAAGAAGTGTAAATGCATCGAGAATGTTCGGTTTTGAGGTTCGATACTATGCGGAATTGATCAGAGAGTCGAACTTTAGCTCCGACGATGTTTCGGTGATCGATGTCGTTTCGCAGTCCGACGTGGCGGCTCTTTTGTACTCTTCCGGCACGACGGGGAGGAGCAAGGGAGTGGTGCTGACTCACCGGAACTTCATGGCGGCGGCGGTGGCTGGAACGGTGGACCAGGACCGTTACGACAAAGGGAAGAACGTGTTCCTGTGCTTCGTGCCGATGCATCACGTGCTTGGGCTTTCGACTATAACGTACGTGCAGCTGCGAAAGGGGAACATAGTGGTGTCGATGGTGAGGTTTGATCTGGAGAAGGCTCTGGAAGCGATGGAGAAGTTCCAAGTGACTTATATGTACGTTGTTCCGCCGGTGATGGTGGAACTGGCGAAGCGGCGTGATGTGGTGAAGGCGTATGACTTGTCGTACCTGAAGCAGCTAGTGGGTGGTGCTGCACCTTTGGGGAGAGACTTGATGCATAAATGTGCTAAGGTTATTCCCCAAGTTGAAATCATTCAGGCATATGGCATGACTGAAGCATGTGGAGGTATTTCCGTAGAAAATCCAAAGGAAGAATGCCACCTTTCAGGTTCAACTGGAACATTAATTCCATGTGTAGAATCCCGGATAGTTAGTTTAGTAACATCGAAGCCCCTTCCACCTAATCAGTTAGGGGAAATTTGGCTACGAGGACCTACTATGATGCAAGGATACTTTAACAATCCAGAAGCGACAAAATTGACCATTGATGATCAAGGTTGGCTGCATACAGGAGATCTTGGATATTTTGATGAAGAGGGACAGCTGTTTGTTGTGGATCGAATAAAAGAGCTAATCAAGTGTAACGGGTATCAGATATCCCCCGATGCTAAAGCTGGTCAGGTTCCAGTTGCTTTTGTTGTTCGCTCACCCAATAGCTCGATAACACCAGAAGATATTCAGAAGTTTGTAGCAAAACAGGTTGCACCATACAAAAGGTTGCGGCGAGTGACTTTTATAAAGAAGATTCCAAAGTCAGCCACAGGAAAGATCATAAGAAAGGACCTCATAAGTTTTCATCGACAAAAAACATCAAAGTTATAG 1587 0.4833 MAKCFDLKTITYYSHRPPIHLPTDPNLSLTSFLFQSTTSSVSTLALADVDSGHSLTFRNLKTHVSALSRSLLRLGIRKSDVVLLFAPNSIRFPICFLAVVAIATTCSPLYTISELSTQVYDSKPKLVITVTELFHKIEALALDLPYIMLDDPSRSVNASRMFGFEVRYYAELIRESNFSSDDVSVIDVVSQSDVAALLYSSGTTGRSKGVVLTHRNFMAAAVAGTVDQDRYDKGKNVFLCFVPMHHVLGLSTITYVQLRKGNIVVSMVRFDLEKALEAMEKFQVTYMYVVPPVMVELAKRRDVVKAYDLSYLKQLVGGAAPLGRDLMHKCAKVIPQVEIIQAYGMTEACGGISVENPKEECHLSGSTGTLIPCVESRIVSLVTSKPLPPNQLGEIWLRGPTMMQGYFNNPEATKLTIDDQGWLHTGDLGYFDEEGQLFVVDRIKELIKCNGYQISPDAKAGQVPVAFVVRSPNSSITPEDIQKFVAKQVAPYKRLRRVTFIKKIPKSATGKIIRKDLISFHRQKTSKL* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01001 528 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 518 - -
Rops6g01001 528 Pfam AMP-binding enzyme 45 449 IPR000873 -
Rops6g01001 528 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 444 - -
Rops6g01001 528 Pfam AMP-binding enzyme C-terminal domain 456 511 IPR025110 -
Rops6g01001 528 SUPERFAMILY Acetyl-CoA synthetase-like 24 522 - -
Rops6g01001 528 Gene3D - 454 526 IPR045851 -
Rops6g01001 528 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Rops6g01001 528 Gene3D - 10 445 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01001 Rops-Chr6 23952110 23956836 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01001 12 524 Monolignol Biosynthesis Gene Families AT4G05160 54.128 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01001 K01904 - psat:127097095 718.383