Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00997 ATGGGCAGGGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGATTCCTGAAGAAGATGAAAAGCTAAAGGAATACATAGAGAAACATGGGACAGGAGGGAATTGGATTGCCCTCCCACAAAAAGCAGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTTAGATGGCTTAATTATCTCAGACCCAATCTCAAGCATGGAGAGTTTTCTGAAGATGAAGATAGAATAATCTGCAGTCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCTGGTAGAACTGACAATGATATCAAGAATTATTGGAACACAAAGCTTAAGAAAAGAATGATGGGAATGAATCCTTCAACACTGAAGAAACCTCACCAAGTTACCCTTTTATCCATGCTTCATAATTCAACAACACCATCTTCATCCTCATCATCATCTTCACCGTTATCATTAAGAGACAACCACAACTCTTACTACCACCACCCCCATGTCTCTTTCACTGGCTCTGAGTCCATTTCATACTCCTCAAGTCTTTTGTTTGGCAACAATTCTTCTACCTCTGCCAATTCCATTTTTCAAGCACAAGAAAGTTTCTTGGGCCCCATTCAGAATTACCATGTTAATAATAGTGTCTTTATGTTAGGGGGTGAAGCTAGTTGCACCTCTTCTGATGGAAGCTGCAACAACAACCAGATCAATCAGGTCAAAGAAGCAGAAACTGCATATGTTGGTGATGGAACTTCTGCTGACCAATTAGGTGCACTTAATTATGTGTACAATGAGGTGGAAGATACCCAAAAGTTGATGCTCTCCAATGCTGGTAGGGTTAGTGGGTGGACAGTGGAACAAAGTAGATTATGGGGAGAAAATCCATTAGATTATGGTCTAGAAGAAATTAAAGAGCTTATAAGCACTAGTAGTTGCAACAACTTTTTGTTTGATGACAAGAAGACAGAGGAAAGGGTCATGTACTACTGA 990 0.404 MGRAPCCDKANVKKGPWIPEEDEKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKRMMGMNPSTLKKPHQVTLLSMLHNSTTPSSSSSSSSPLSLRDNHNSYYHHPHVSFTGSESISYSSSLLFGNNSSTSANSIFQAQESFLGPIQNYHVNNSVFMLGGEASCTSSDGSCNNNQINQVKEAETAYVGDGTSADQLGALNYVYNEVEDTQKLMLSNAGRVSGWTVEQSRLWGENPLDYGLEEIKELISTSSCNNFLFDDKKTEERVMYY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00997 329 PANTHER OS09G0431300 PROTEIN 1 298 - -
Rops6g00997 329 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops6g00997 329 FunFam Transcription factor MYB36 70 141 - -
Rops6g00997 329 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops6g00997 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops6g00997 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops6g00997 329 CDD SANT 16 62 IPR001005 -
Rops6g00997 329 Gene3D - 7 68 - -
Rops6g00997 329 SMART sant 13 64 IPR001005 -
Rops6g00997 329 SMART sant 67 115 IPR001005 -
Rops6g00997 329 MobiDBLite consensus disorder prediction 139 158 - -
Rops6g00997 329 FunFam Transcription factor RAX3 7 68 - -
Rops6g00997 329 CDD SANT 70 113 IPR001005 -
Rops6g00997 329 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops6g00997 329 Gene3D - 69 134 - -
Rops6g00997 329 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops6g00997 329 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00997 Rops-Chr6 23915855 23917895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00997 1 119 MYB Transcription Factor Family AT5G57620 86.555 5.70e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g00997 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00997 K09422 - gmx:100820139 452.595