Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00983 ATGCAAGGAGAAGAACATTTGCGTAAAGGGACTTGGCTCCAAGAGGAAGATGAGCAATTGATAAGCTTTGTGACCCGTCTTGGGGAACGAAGGTGGGATTCCCTTGCCAAAGTAGCAGGCCTTAGGAGAAGTGGTAAAAGCTGCAGGTTAAGATGGATGAACTATCTTCGTCCAAATATCAAGCGTGGCCCTTTTAGTGTTGAAGAAGAGCAACTTATTGTTCAACTTCAGCAACTATGGGGTAACAAGTGGTCCAAGATTGCTCGTAGGCTTCCAGGAAGAACTGACAATGAAATCAAGAACTACTGGAGAACTCATTTAAGAAAAAGAGTACAAGTTCAACAAGAAGGTGAGTTCAAGTATGAATTAGAAAACGCAGCACAAGATTTCAACCAGGAAAGCATTGATATGGTTTCCAAGGATTACAACCATGTAAACTTTTACAGTCAAGATAGTGAGTGGGAGACTAAGGATATCTCCATAGACACTTTTCACTTATCAGATTGGGAAATGAGAAGCTCACCTTATGAAACTAGGATATTAGATTGGATAGCAGAATTGCAAAATGGATTAAAACAAGATTGTAATAGCACAGGAACGTACAACTATAGTCCTCAAGAGTTTGCAGAGGGTTGTGATACATGGGATTACTCAGGTTCCCTGTGGGACATGAATTAA 678 0.4056 MQGEEHLRKGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWMNYLRPNIKRGPFSVEEEQLIVQLQQLWGNKWSKIARRLPGRTDNEIKNYWRTHLRKRVQVQQEGEFKYELENAAQDFNQESIDMVSKDYNHVNFYSQDSEWETKDISIDTFHLSDWEMRSSPYETRILDWIAELQNGLKQDCNSTGTYNYSPQEFAEGCDTWDYSGSLWDMN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00983 225 Gene3D - 63 134 - -
Rops6g00983 225 SMART sant 61 109 IPR001005 -
Rops6g00983 225 SMART sant 8 58 IPR001005 -
Rops6g00983 225 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Rops6g00983 225 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 3 171 - -
Rops6g00983 225 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Rops6g00983 225 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Rops6g00983 225 CDD SANT 64 107 IPR001005 -
Rops6g00983 225 CDD SANT 11 56 IPR001005 -
Rops6g00983 225 Gene3D - 9 61 - -
Rops6g00983 225 FunFam Myb transcription factor 9 61 - -
Rops6g00983 225 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Rops6g00983 225 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Rops6g00983 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Rops6g00983 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00983 Rops-Chr6 23710564 23711674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00983 4 112 MYB Transcription Factor Family AT5G59780 62.385 5.62e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g00983 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00983 K09422 - gmx:100783472 364.77