Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00982 ATGCTCCAAACAACCTGCATTTTACTACTCTCTGTTCTGGGTTCGTTTTTACCCCATGGAAGAGCAATGCTGAACCTCACTCTGCCAGGGCAACATCCAGACCCTGAAGCTGTTGCCCGTGAAGTTCATAGGAGGGTTAATGCTTCAATGACAAGAAGGGAAATGCTAGCAGTATCAGAGAAAGATGTGGCATCATGTTTAACAGGGAACCCCATTGATGATTGTTGGAAATGTGACCCAGATTGGGCCAACAATCGACAGAGGCTTGCTGATTGTGCAATTGGGTTTGGGATGAACGCAAAGGGAGGCAAAGGTGGTCAGTTTTACATTGTCACAGATTCCTCAGATGATGACCCTGTGAACCCAAAACCTGGCACACTCAGATATGCAGTGATACAGAATGAGCCACTGTGGATTGTGTTCCCAAATAACATGATGATTAAGCTGTCTCAGGAGCTCATCTTTAACAGCTTCAAGACCATTGATGGGCGTGGTGCTGATGTGCACATTGTGGGTGGAGGTTGCATTACTCTTCAGTACATAAGCAATGTCATTATACACAACATTCATATCCACCATTGCCATCCCTCAGGTAACACTAACGTGCGGTCGAGTCCAGAGCACTACGGCTACAGAACAGAATCCGACGGTGACGGAATATCAATCTTCGGATCAAAAGACATATGGATCGACCACTGCACCCTTTCACGTTGCAAAGACGGTCTAATAGACGCGGTGATGGGTTCAACGGCCATAACAATATCCAACAACCACTTCTCTCACCACAACGAGGTGATGCTGTTAGGTCACAGCGACCATTACACACCAGACTCAGCCATGCAGGTAACCACTGCTTTCAACCACTTCGGCGAGAGCCTGGTTCAGAGGATGCCACGTTGCAGGCTGGGGTACATCCACGTGGTGAACAATGATTTCACGATGTGGGAGATGTATGCGATTGGGGGGAGTGGGGGACCCACGATTAACAGTCAGGGGAACCGTTATACGGCTCCTGAGGATGGTTTTGCTAAGGAGGTTACGAAGAGGTTGGATTCAGGGGAAGGGGAGTGGACTTCGTGGAATTGGAGGTCGGAGGGGGATGTTATGGTGAATGGGGCTTTTTTTGTTGCTTCCGGTGAAGGTGCTCAGGCTAAGTATGAGAAGGCTTATAGTGTTGAACCTAAGTCTGCTGATCGGATTACCCTCCTTACCATGGGTTCTGGTGTTCTTGGTGTTGCTAGGGACAATAATGTGGGTATGTGGACTAGAGGACCCAACGATGGTGGTGCTTATATCTCAGATTTCGTCCCAGAATACACCGATGATATGTCCCGGAGTACAATGCTGTTGCCACCTTCACTTACTTTGACTCTTGTATCTGTTTTTGTTGCATTGTTGTGCTTGTTATAA 1410 0.4773 MLQTTCILLLSVLGSFLPHGRAMLNLTLPGQHPDPEAVAREVHRRVNASMTRREMLAVSEKDVASCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGMNAKGGKGGQFYIVTDSSDDDPVNPKPGTLRYAVIQNEPLWIVFPNNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYTPDSAMQVTTAFNHFGESLVQRMPRCRLGYIHVVNNDFTMWEMYAIGGSGGPTINSQGNRYTAPEDGFAKEVTKRLDSGEGEWTSWNWRSEGDVMVNGAFFVASGEGAQAKYEKAYSVEPKSADRITLLTMGSGVLGVARDNNVGMWTRGPNDGGAYISDFVPEYTDDMSRSTMLLPPSLTLTLVSVFVALLCLL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00982 469 PANTHER PECTATE LYASE 18-RELATED 31 413 IPR045032 GO:0030570
Rops6g00982 469 SMART amb_all 144 341 IPR002022 -
Rops6g00982 469 Gene3D - 69 411 IPR012334 -
Rops6g00982 469 Pfam Pectate lyase 153 321 IPR002022 -
Rops6g00982 469 SUPERFAMILY Pectin lyase-like 70 398 IPR011050 -
Rops6g00982 469 FunFam Pectate lyase 69 411 - -
Rops6g00982 469 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Rops6g00982 469 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Rops6g00982 469 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Rops6g00982 469 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Rops6g00982 469 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Rops6g00982 469 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Rops6g00982 469 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Rops6g00982 469 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00982 Rops-Chr6 23702755 23706607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00982 1 468 Polysaccharide Lyase AT3G53190 71.639 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00982 K01728 - gmx:100815062 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00982 6 23702755 23706607 Rops6g00982 6 23702755 23706607 ECH
Rops8g03370 8 72556216 72559140 Rops6g00982 6 23702755 23706607 PCT