Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00979 ATGGACATGCGGAACCGCTACATCACCGCCGGTAGGCCCCGTCAGATCATTACACCGGAAATCCTCTGGGCCGCTTTAGCCGAGTTCATCGCCACATTCATCTTCGTCTTCGCCGGCTCCGGTTCCGGCATCGCCATGAACAAGATCACCGGAAACACCGCCGCGACACCTGACGGCCTCATCGCCTCCGCCATCGCTCACGCGTTCGCCCTCTCCACCACAGTCAAAGCCGCCACGAGATTCTCCGACGGCCACGTCAACCCCGCCGTCACCTTCGGCGCCTTCATCACCGGCAACATCAACATCTTTCACGGCATCTTCTATTGGATTGCTCAGCTCCTCGGCTCCATCGTCGCATGCTTGCTCCTCAAGTTCGCCACCGGCGGACAGAGTGTGCCGGTTTTTGGACTTTCGGAGGGAGTGGGAGTGAAGAGCGCGGTGGTGTTAGAGATGGTGATGACGTTTGGATTGGTTTACACGGTTCACGCTACTACCGTTGACCCCAAGAAAAGAGAGTGTGGCTTGGACAAGATTGCACCCATTGCTATTGGGCTCATTTTCGGAGCGAATATTTTAGTGGGTGGGGCTTCTGATGGGGCATGCATGAACCCGGCTTTGTCGTTTGGGCCTGCTGTAGTGGGCTGGAGCTGGGACAACCATTGGGTTTACTGGGTTGGGCCCCTCCTTGGTGGTGGGCTTGCTGGGTTTGTTTATGAGTTTTTCTTTATTACTGATTAG 738 0.561 MDMRNRYITAGRPRQIITPEILWAALAEFIATFIFVFAGSGSGIAMNKITGNTAATPDGLIASAIAHAFALSTTVKAATRFSDGHVNPAVTFGAFITGNINIFHGIFYWIAQLLGSIVACLLLKFATGGQSVPVFGLSEGVGVKSAVVLEMVMTFGLVYTVHATTVDPKKRECGLDKIAPIAIGLIFGANILVGGASDGACMNPALSFGPAVVGWSWDNHWVYWVGPLLGGGLAGFVYEFFFITD* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00979 245 PANTHER AQUAPORIN-8 10 243 IPR034294 -
Rops6g00979 245 Pfam Major intrinsic protein 20 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g00979 245 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g00979 245 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g00979 245 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g00979 245 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g00979 245 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g00979 245 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g00979 245 FunFam Probable aquaporin TIP1-1 6 245 - -
Rops6g00979 245 SUPERFAMILY Aquaporin-like 15 243 IPR023271 -
Rops6g00979 245 Gene3D Glycerol uptake facilitator protein. 7 245 IPR023271 -
Rops6g00979 245 CDD MIP 23 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g00979 245 ProSitePatterns MIP family signature. 85 93 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00979 Rops-Chr6 23658424 23659313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00979 1 244 Major Intrinsic Protein MIP AT2G36830 65.984 5.14e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00979 K09873 - zju:107431962 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00979 6 23658424 23659313 Rops8g03305 8 71657242 71658760 ECH
Rops6g00979 6 23658424 23659313 Rops6g02444 6 44651960 44654963 ECH
Rops6g00979 6 23658424 23659313 Rops6g00979 6 23658424 23659313 ECH
Rops6g00979 6 23658424 23659313 Rops7g00684 7 9031762 9033547 ECH
Rops8g03373 8 72611826 72612985 Rops6g00979 6 23658424 23659313 PCT