Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00978 ATGCAGGTCCCAGAGGAACTTGTGGTTTCCAAGGATCACATGCAGATCATCAAAGGTAAGAGGACCAAACGTCAAAGGGCACCCTCTCCACTCAGGTTAGCCATGCCTTCAACTTCTTGCACTGAAAACTCTGGAGGACTAGTTGATCAAGTTACTACAACAACCTCGCCCACCAACACAATTGGATTGAGGGACAGAACCGAAGAAGAAGAGGACATGGCCAATTGTCTCATTCTTTTGGCTCAAGGGCATCATCATCATAACACACCTGTGGCAGATCACAATACCAACAAATCAAGCCTATACCTTTACCAGTGCAAGACTTGTGACCGATGCTTCCCTTCATTTCAAGCCCTTGGTGGACATAGAGCCAGCCACAAGAAACCTAAGGCAAATGGTAATGGTAATGGTACCGAAGAAAAGCAAGCAATTACTACTTTTGTGAATGAAGAGGGTGATCATTATGACCCCACCACCACAAATACAATCCTCTCCTTGCAAATGTGTAGCAGCAGTATTATTAGTACTACTACTACTACAACAAAATCTAAAGTTCATGAGTGTTCTATCTGTGGTGCTGAATTCTCATCTGGGCAAGCCTTGGGAGGTCATATGAGGCGGCACAGAACTCTTGCGAACAAGTCTATTACCGGTGGTGGTAGCCCTGAATCCCAAGAAGCCAAGAAACCCAGAAAGGTTTTGAAGTTGGATTTGAATCTTCCAGCACCAGAGGATGATCACAGAGAATCCAAGTTTTCTTTTCCGCCTAGAGAAAACAACATTATTGTTTTCTCTAAATCTTCTTTGGTGGATTGTCATTACTGA 825 0.4388 MQVPEELVVSKDHMQIIKGKRTKRQRAPSPLRLAMPSTSCTENSGGLVDQVTTTTSPTNTIGLRDRTEEEEDMANCLILLAQGHHHHNTPVADHNTNKSSLYLYQCKTCDRCFPSFQALGGHRASHKKPKANGNGNGTEEKQAITTFVNEEGDHYDPTTTNTILSLQMCSSSIISTTTTTTKSKVHECSICGAEFSSGQALGGHMRRHRTLANKSITGGGSPESQEAKKPRKVLKLDLNLPAPEDDHRESKFSFPPRENNIIVFSKSSLVDCHY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00978 274 Gene3D Classic Zinc Finger 101 208 - -
Rops6g00978 274 SMART c2h2final6 186 208 IPR013087 -
Rops6g00978 274 SMART c2h2final6 104 126 IPR013087 -
Rops6g00978 274 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Rops6g00978 274 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Rops6g00978 274 Pfam C2H2-type zinc finger 104 129 - -
Rops6g00978 274 Pfam C2H2-type zinc finger 185 209 - -
Rops6g00978 274 PANTHER ZINC FINGER PROTEIN ZAT5 26 255 - -
Rops6g00978 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Rops6g00978 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 208 IPR013087 -
Rops6g00978 274 MobiDBLite consensus disorder prediction 213 232 - -
Rops6g00978 274 SUPERFAMILY beta-beta-alpha zinc fingers 103 208 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00978 Rops-Chr6 23647096 23648159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00978 9 274 C2H2 Transcription Factor Family AT2G28200 42.384 3.11e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g00978 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00978 - - gmx:100815595 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00978 6 23647096 23648159 Rops8g03374 8 72633235 72634092 ECH
Rops6g00978 6 23647096 23648159 Rops6g00978 6 23647096 23648159 ECH
Rops6g00978 6 23647096 23648159 Rops7g00629 7 8167546 8168933 ECH
Rops8g03374 8 72633235 72634092 Rops6g00978 6 23647096 23648159 PCT