Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00976 ATGGCGGTTCCGGGGAGGCACGATGGTCTGAACGATGATGAAGAAGCCGACGCTCTTTTCGAAGAAGAAGGTCTCCTCGAACTCGAAGAAGAATATGACACAAATACCCCTCCTCATCTCCGTGACCTCTCCCTCGCCGCTCAACTCGGCGACCTCAACGCTCTTCGCCTCGCCCTTGATAACTTGAATGGTAGTATCGATGAGCCAGTGGAGGATGGGGATACGGCTCTTCATTTGACCTGTTTATATGGCCATTTTGAATGTGTTCAGCTGTTGATTGAAAGAGGAGCCAACTTGGAGGCTAAGGATGAAGATGGTGCAATTCCTTTACATGATGCTTGTGCTGGAGGATTTACTGAGATAGTTCAACTGCTACTCAACAGTGCTAATGATCCAGAGCATATAAAAAGGATGCTAGAATCAGTTGATGCTGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGGCTAATGGTGCGTCTTCCACAACGACAAACTTATATGGAAAGACCCCAGCAGAGTTACCTGATCAGGACACTAATGCTAGGAGGTTGCTGGAAGCTGGCGCTACCGCTATGGCAAACTGA 618 0.479 MAVPGRHDGLNDDEEADALFEEEGLLELEEEYDTNTPPHLRDLSLAAQLGDLNALRLALDNLNGSIDEPVEDGDTALHLTCLYGHFECVQLLIERGANLEAKDEDGAIPLHDACAGGFTEIVQLLLNSANDPEHIKRMLESVDAEGDTPLHHAARGEHVDVIRLLLANGASSTTTNLYGKTPAELPDQDTNARRLLEAGATAMAN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00976 205 ProSiteProfiles Ankyrin repeat profile. 72 104 IPR002110 GO:0005515
Rops6g00976 205 SMART ANK_2a 72 101 IPR002110 GO:0005515
Rops6g00976 205 SMART ANK_2a 145 177 IPR002110 GO:0005515
Rops6g00976 205 SMART ANK_2a 105 134 IPR002110 GO:0005515
Rops6g00976 205 ProSiteProfiles Ankyrin repeat region circular profile. 145 171 - -
Rops6g00976 205 ProSiteProfiles Ankyrin repeat region circular profile. 105 131 - -
Rops6g00976 205 SUPERFAMILY Ankyrin repeat 37 185 IPR036770 -
Rops6g00976 205 PANTHER SOWAH (DROSOPHILA) HOMOLOG 36 199 - -
Rops6g00976 205 Gene3D - 107 198 IPR036770 -
Rops6g00976 205 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Rops6g00976 205 Pfam Ankyrin repeats (many copies) 146 185 IPR002110 GO:0005515
Rops6g00976 205 Gene3D - 10 106 IPR036770 -
Rops6g00976 205 Pfam Ankyrin repeats (3 copies) 43 128 IPR002110 GO:0005515
Rops6g00976 205 ProSiteProfiles Ankyrin repeat profile. 145 177 IPR002110 GO:0005515
Rops6g00976 205 ProSiteProfiles Ankyrin repeat region circular profile. 72 104 - -
Rops6g00976 205 FunFam BRCA1-associated RING domain protein 1 37 204 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00976 43 191 Ion Channels AT2G25600 30.899 2.49e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00976 - - gmx:100527544 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00976 6 23616071 23617976 Rops6g00976 6 23616071 23617976 ECH