Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00959 ATGGACGCCAAACTCGAAACGACCACTGATTCCGAAAACGACAGCTGCAAGATGCAGCAGCAGCGGAGAGGGGAGTTGGTGAACGGCTACGTCGTTTACACTCGACGAAAGAGGATCCACCATTCAGAGAATGAAAAAGCCAAGAGACTCAAAATTAGCGCAGAAGGTGACAATGCAGGAGTTAAAGTGGAAAACGAGGTTGAGGCGGTGCAAAACGACGTCGTATTCGGGAAGTTCAAACGGCATCGGCGATCCGCGTTGAAGCCCAAGGTTGAGGCAGAGGATTCGAAGAGCGAGTTGGAATTGAAGATTTCCAACAAGATCATCGTGGTTAACAAGAAGCCTATGACAGTTAAGGAGCTTTTCGATACTGGTTTACTTGATGGTGTTCCAGTTGTTTACGTAGGTGTCAAGAAGGCTGAAACTTCAGGATTGCGGGGTGTAATTTCAAATGGGGGGATATTGTGTTCGTGCAGTATGTGCAATGGACGCAGAGTTATTCCACCTTCCCAATTTGAGATTCATGCTTGCAATACATATAAGAGGGCAGCGGAGTATATTTGCCTTGAAAATGGGAAGAGCCTGCTTGAACTATTAAGAGCATGCAGGGCAGCTCCCCTACATACTTTGGAGGCGACCATTCAAAATTTTGTTAGTTCGCCGCCCGAGGAAAAATATTTTACTTGCAAAAGTTGCAAAGGCTGTTTCCCTTCTTCAACTGTGGAAAGAGTGGGGCTTACATGCCGTTCTTGCGTGGAATCAAGGAAATCGGAAAATGGTTCGATTCATGCAGTTGGCAAAAGAGTCAGGTTCCCTAGACCCATATTGTTCTCCAGTCCATGTAGTACTTCTGAGTGTATCTCTTCACAAACTAAGAGACACTGGAAGACAAGAACAAAGTCATCTAAACGCGTTAGCAGCACAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTATACCGAAAGAAAAGTTTGTGCTGCATGGAAACAAAGTCATCAAAACTGTCAGTAAAATTGAAGACTGCTTCAATTACTTCAAATTCAAAGTGTTTATCTCCACAAAGCAAGAGTCAGTGGAGGATCACTAAAAAGCATCAGCGATTGCATAAATTAATTTTTGAAGAAGATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTCGAGGGTATCAAAAGGCGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGGTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACGTCCAATGGGGTGTCTCTCCATGAGTTAGCAATATTTCTCTCAAAAGATCGCAAGTACCCTGAAAAGTATAATGATGATGCATGCATTGTTTGTTGGGATGGTGGAAATTTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCAGTATCAAGTATTCCTCGTGGTGAGTGGTACTGTCAAATTTGTCAACACACATTCCTTGGAGAAAGATCTGTGGCACCCAATGCTGATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATAGCCAAGAGATGCATTCGCATAGTAAAAGACATTGACGCTGAGATTAGTGGATGTGTTTTATGCAGGGGTTCTGACTTCAGCAGATCAGGATTTGGTCCACGCACAATAATAATATGTGATCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCATAAGATGGCGTATTTGAAGGAGTTGCCTGAAGGTAATTGGCTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAACCTCCTGGTTAGGGTGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAAAAACAAGAGGAAAGATGTTTAGAACCCCTTAATGAGATTGATGTAAGATGGAGACTTATTAATGGCAAAGTTGCTTCTCCTGAAACTAGGCCATTGCTTTTGGAGGCTGTGTCATTGTTTCATGAATGCTTTGATCCTATAGTAGACGCGGCCACTGGACGTGACCTTGTTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTTTTGTGCATTATTAATGGTCAATTCATCTGTGGTATCTGCGGGCATGTTTCGGATTTTTGGTAGAGACATTGCAGAACTCCCTTTAGTTGCAACAAAAACCAAGTACCGTGGAAAGGGCTACTTCCAAACACTGTTCTCGTGCATTGAGAGGCTGCTAGCTTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCTGAAGAAGCAGAATCCATATGGACAGATAAATTTGGATTGAGCAAGGTGAAACCTGACCAGCTTACCTACTATAGAAAGAACTTCCATCAGCTGATGGCATTCAAAGGGACACTAATGCTTCATAAAACGGTGCCTCAATGTCGGGTCATCAATGCTCAATCATGA 2487 0.4359 MDAKLETTTDSENDSCKMQQQRRGELVNGYVVYTRRKRIHHSENEKAKRLKISAEGDNAGVKVENEVEAVQNDVVFGKFKRHRRSALKPKVEAEDSKSELELKISNKIIVVNKKPMTVKELFDTGLLDGVPVVYVGVKKAETSGLRGVISNGGILCSCSMCNGRRVIPPSQFEIHACNTYKRAAEYICLENGKSLLELLRACRAAPLHTLEATIQNFVSSPPEEKYFTCKSCKGCFPSSTVERVGLTCRSCVESRKSENGSIHAVGKRVRFPRPILFSSPCSTSECISSQTKRHWKTRTKSSKRVSSTNSSKSASVPILYRKKSLCCMETKSSKLSVKLKTASITSNSKCLSPQSKSQWRITKKHQRLHKLIFEEDGLPDGAEVAYYARGQKLLEGIKRRSGIVCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDRKYPEKYNDDACIVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLGERSVAPNADAVAAGRVEGVDPIEQIAKRCIRIVKDIDAEISGCVLCRGSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVRVAERLPESLLDVIKKKQEERCLEPLNEIDVRWRLINGKVASPETRPLLLEAVSLFHECFDPIVDAATGRDLVPAMVYGRNLQTQDFGGMFCALLMVNSSVVSAGMFRIFGRDIAELPLVATKTKYRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGLSKVKPDQLTYYRKNFHQLMAFKGTLMLHKTVPQCRVINAQS* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00959 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 527 IPR013083 -
Rops6g00959 828 ProSitePatterns Zinc finger PHD-type signature. 463 502 IPR019786 -
Rops6g00959 828 SMART PHD_3 550 607 IPR001965 -
Rops6g00959 828 SMART PHD_3 462 503 IPR001965 -
Rops6g00959 828 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 547 609 - -
Rops6g00959 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 609 IPR013083 -
Rops6g00959 828 PANTHER AUTOIMMUNE REGULATOR 48 817 - -
Rops6g00959 828 ProSiteProfiles Zinc finger PHD-type profile. 460 505 IPR019787 -
Rops6g00959 828 SUPERFAMILY FYVE/PHD zinc finger 448 505 IPR011011 -
Rops6g00959 828 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 706 781 IPR016181 -
Rops6g00959 828 SUPERFAMILY FYVE/PHD zinc finger 541 604 IPR011011 -
Rops6g00959 828 Pfam Tify domain binding domain 399 446 IPR032308 -
Rops6g00959 828 Pfam Tify domain binding domain 147 202 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00959 Rops-Chr6 23019897 23028989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00959 92 825 PHD Transcription Factor Family AT2G36720 51.475 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00959 - - gmx:100798276 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00959 6 23019897 23028989 Rops6g00959 6 23019897 23028989 ECH
Rops8g03392 8 72961214 72978112 Rops6g00959 6 23019897 23028989 PCT