Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00951 ATGGCACAAACTATTATATTTGTGCGCACAAGAAATAATGCAAAAGATTTGCATAAAGCACTTGTTAATTGGGGCTACGAGGTTACTTCCATACAGGGTTCTCTTGAGCATGAAGAAAAAGACAAGATTGTCAAGGAGTTCAAAGATGGTTTGACTTGGGTTCTTATATCAATTGATGTTCTTACCTTTGACATTGATCAACAAAAGGTTAATTTGGTTATCATCTATGATCTTCCAGTGAAACATACTACTGAGTATACTCGTGAACCAGAGCCTGATTATGAGGTGTAA 291 0.3608 MAQTIIFVRTRNNAKDLHKALVNWGYEVTSIQGSLEHEEKDKIVKEFKDGLTWVLISIDVLTFDIDQQKVNLVIIYDLPVKHTTEYTREPEPDYEV* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00951 96 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 3 87 - -
Rops6g00951 96 Pfam Helicase conserved C-terminal domain 3 86 IPR001650 -
Rops6g00951 96 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 96 IPR001650 -
Rops6g00951 96 Gene3D - 1 89 IPR027417 -
Rops6g00951 96 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 84 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00951 Rops-Chr6 22921985 22922388 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00951 1 79 Eukaryotic Initiation Factors Gene Family AT3G19760 37.975 7.71e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00951 K18655 - egr:104425932 125.946