Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00948 ATGGCAGAAGCACCTATCACCGCCACCGATTCCTCCACCGCCAGTGCCGCTCCTCCACCGGCGCCAAAAAGCTGGGCCGATCAAGCAGATGAAGAAACGAACGGTTCGTCCTCGACGGCGCCTAACATCGACGAATTAACGATAGACGATAACAAGAAGCCTCCAAAATTGTTAGACGATCCCGAAGATTCTAACATCCAAGCCGTTACTTCCGGTGACACTCCGTACACATCTGCGGCAAGATTCGAAGACTTGAATCTCTCGGATGAGCTTATAAAGGGACTCTATGTGGAGATGAAGTTTCAAAAGCCTAGTAAAATCCAAGCAATAAGTTTACCCATGATCCTGATCCCACCACACAGGGATTTGATAGCACAGGCGCATAATGGTTCCGGGAAAACCACTTGTTTTGTTCTTGGGATGCTTAGTCGTGTTGATACTAAGTTGCAGGGTCCTCAAGCCCTCTGTATTTGTCCTACCAGAGAATTGGCTATTCAGAATACTGAGGTTCTCCGAAAGATGGGGAAGTACACGGGGATCAGTTCGGAGTGTGCTGTGCCAATGGATAGTAGGGATGCACTACCGATAGCAAAACGGGCTCCGATTATGGCTCAAGTGGTTATTGGAACTCCTGGTACGATTAAGAAGTGGATTGCTTATAAAAAACTTGGGGTAACAAGATTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTCAAGAGGATTCACTGAGGATAATGAAAGAAATTGGAAAATTCAATGCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGACACTGTCAAGAATTTTGTTTCAAAGACAGTTAAGCAGGATCATAATAAACTTTTTGTGAAGAAAGAAGAATTATCTTTAGATGCAGTGAAGCAATATAAAGTCCATTGTCCTGATGAACTCTCTAAGGTTGAAGTGATAAAAGATTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTACGCACAAGAAATAGTGCGAAAGTTTTGCATAAAGCACTTGTTGATATGGGCTACGAGGTTACTTCCATACAAGGTGCTCTTGATCATGAAGAGAGAGACAAGATTGTCAAGGAGTTCAAAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAATTATGATCTTCCAGTGAAACACACTGCTGAGTATACCCGTGAACCAGAGCCAGATTGTGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGTTTCGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAAAGGGATGCAAAGCTGATGTCAAAGATTGAGAACCATTTTGGCACCCACATAACTGAGGTGCAAGAAAAAAGTGTTGAAGACTATAAACGTGCTCTTAAGGAAGCTGGTTTACTGCAATGA 1470 0.4299 MAEAPITATDSSTASAAPPPAPKSWADQADEETNGSSSTAPNIDELTIDDNKKPPKLLDDPEDSNIQAVTSGDTPYTSAARFEDLNLSDELIKGLYVEMKFQKPSKIQAISLPMILIPPHRDLIAQAHNGSGKTTCFVLGMLSRVDTKLQGPQALCICPTRELAIQNTEVLRKMGKYTGISSECAVPMDSRDALPIAKRAPIMAQVVIGTPGTIKKWIAYKKLGVTRLKILVFDEADQMLAEDGFQEDSLRIMKEIGKFNANCQVLLFSATFNDTVKNFVSKTVKQDHNKLFVKKEELSLDAVKQYKVHCPDELSKVEVIKDYIFEIGENVGQTIIFVRTRNSAKVLHKALVDMGYEVTSIQGALDHEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICGERDAKLMSKIENHFGTHITEVQEKSVEDYKRALKEAGLLQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00948 489 SMART helicmild6 345 438 IPR001650 -
Rops6g00948 489 MobiDBLite consensus disorder prediction 29 45 - -
Rops6g00948 489 SMART ultradead3 100 306 IPR014001 -
Rops6g00948 489 Gene3D - 59 297 IPR027417 -
Rops6g00948 489 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 109 IPR014014 GO:0003724
Rops6g00948 489 Pfam Helicase conserved C-terminal domain 317 438 IPR001650 -
Rops6g00948 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 486 IPR001650 -
Rops6g00948 489 MobiDBLite consensus disorder prediction 46 60 - -
Rops6g00948 489 Pfam DEAD/DEAH box helicase 106 278 IPR011545 GO:0003676|GO:0005524
Rops6g00948 489 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 459 - -
Rops6g00948 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 451 IPR027417 -
Rops6g00948 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 290 IPR014001 -
Rops6g00948 489 MobiDBLite consensus disorder prediction 1 18 - -
Rops6g00948 489 Gene3D - 298 479 IPR027417 -
Rops6g00948 489 CDD SF2_C_DEAD 303 447 - -
Rops6g00948 489 CDD DEADc_DDX19_DDX25 87 286 - -
Rops6g00948 489 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00948 Rops-Chr6 22896930 22902528 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00948 62 470 Eukaryotic Initiation Factors Gene Family AT3G19760 34.230 1.81e-66 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00948 K18655 - gmx:100778091 745.347